310 lines
9.8 KiB
Python
310 lines
9.8 KiB
Python
import logging
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import operator
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import os
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import shutil
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import subprocess
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from datetime import datetime
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from pathlib import Path
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from typing import List, Optional
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import click
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import pandas as pd
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from pandas.api.types import is_numeric_dtype, is_string_dtype
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from ray._private.thirdparty.tabulate.tabulate import tabulate
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from ray.air.constants import EXPR_RESULT_FILE
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from ray.tune import TuneError
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from ray.tune.analysis import ExperimentAnalysis
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from ray.tune.result import (
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CONFIG_PREFIX,
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DEFAULT_EXPERIMENT_INFO_KEYS,
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DEFAULT_RESULT_KEYS,
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)
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logger = logging.getLogger(__name__)
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EDITOR = os.getenv("EDITOR", "vim")
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TIMESTAMP_FORMAT = "%Y-%m-%d %H:%M:%S (%A)"
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DEFAULT_CLI_KEYS = DEFAULT_EXPERIMENT_INFO_KEYS + DEFAULT_RESULT_KEYS
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DEFAULT_PROJECT_INFO_KEYS = (
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"name",
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"total_trials",
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"last_updated",
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)
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TERM_WIDTH, TERM_HEIGHT = shutil.get_terminal_size(fallback=(100, 100))
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OPERATORS = {
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"<": operator.lt,
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"<=": operator.le,
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"==": operator.eq,
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"!=": operator.ne,
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">=": operator.ge,
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">": operator.gt,
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}
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def _check_tabulate():
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"""Checks whether tabulate is installed."""
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if tabulate is None:
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raise ImportError("Tabulate not installed. Please run `pip install tabulate`.")
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def print_format_output(dataframe: pd.DataFrame):
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"""Prints output of given dataframe to fit into terminal.
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Args:
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dataframe: The dataframe to print to the terminal.
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Returns:
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table: Final outputted dataframe.
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dropped_cols: Columns dropped due to terminal size.
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empty_cols: Empty columns (dropped on default).
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"""
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print_df = pd.DataFrame()
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dropped_cols = []
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empty_cols = []
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# column display priority is based on the info_keys passed in
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for i, col in enumerate(dataframe):
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if dataframe[col].isnull().all():
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# Don't add col to print_df if is fully empty
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empty_cols += [col]
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continue
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print_df[col] = dataframe[col]
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test_table = tabulate(print_df, headers="keys", tablefmt="psql")
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if str(test_table).index("\n") > TERM_WIDTH:
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# Drop all columns beyond terminal width
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print_df.drop(col, axis=1, inplace=True)
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dropped_cols += list(dataframe.columns)[i:]
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break
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table = tabulate(print_df, headers="keys", tablefmt="psql", showindex="never")
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print(table)
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if dropped_cols:
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click.secho("Dropped columns: {}".format(dropped_cols), fg="yellow")
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click.secho("Please increase your terminal size to view remaining columns.")
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if empty_cols:
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click.secho("Empty columns: {}".format(empty_cols), fg="yellow")
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return table, dropped_cols, empty_cols
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def list_trials(
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experiment_path: str,
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sort: Optional[List[str]] = None,
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output: Optional[str] = None,
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filter_op: Optional[str] = None,
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info_keys: Optional[List[str]] = None,
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limit: int = None,
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desc: bool = False,
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):
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"""Lists trials in the directory subtree starting at the given path.
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Args:
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experiment_path: Directory where trials are located.
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Like Experiment.local_dir/Experiment.name/experiment*.json.
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sort: Keys to sort by.
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output: Name of file where output is saved.
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filter_op: Filter operation in the format
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"<column> <operator> <value>".
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info_keys: Keys that are displayed.
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limit: Number of rows to display.
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desc: Sort ascending vs. descending.
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"""
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_check_tabulate()
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try:
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checkpoints_df = ExperimentAnalysis(experiment_path).dataframe() # last result
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except TuneError as e:
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raise click.ClickException("No trial data found!") from e
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config_prefix = CONFIG_PREFIX + "/"
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def key_filter(k):
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return k in DEFAULT_CLI_KEYS or k.startswith(config_prefix)
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col_keys = [k for k in checkpoints_df.columns if key_filter(k)]
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if info_keys:
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for k in info_keys:
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if k not in checkpoints_df.columns:
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raise click.ClickException(
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"Provided key invalid: {}. "
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"Available keys: {}.".format(k, checkpoints_df.columns)
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)
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col_keys = [k for k in checkpoints_df.columns if k in info_keys]
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if not col_keys:
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raise click.ClickException("No columns to output.")
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checkpoints_df = checkpoints_df[col_keys]
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if "last_update_time" in checkpoints_df:
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with pd.option_context("mode.use_inf_as_null", True):
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datetime_series = checkpoints_df["last_update_time"].dropna()
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datetime_series = datetime_series.apply(
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lambda t: datetime.fromtimestamp(t).strftime(TIMESTAMP_FORMAT)
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)
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checkpoints_df["last_update_time"] = datetime_series
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if "logdir" in checkpoints_df:
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# logdir often too long to view in table, so drop experiment_path
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checkpoints_df["logdir"] = checkpoints_df["logdir"].str.replace(
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experiment_path, ""
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)
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if filter_op:
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col, op, val = filter_op.split(" ")
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col_type = checkpoints_df[col].dtype
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if is_numeric_dtype(col_type):
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val = float(val)
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elif is_string_dtype(col_type):
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val = str(val)
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# TODO(Andrew): add support for datetime and boolean
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else:
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raise click.ClickException(
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"Unsupported dtype for {}: {}".format(val, col_type)
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)
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op = OPERATORS[op]
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filtered_index = op(checkpoints_df[col], val)
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checkpoints_df = checkpoints_df[filtered_index]
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if sort:
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for key in sort:
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if key not in checkpoints_df:
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raise click.ClickException(
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"{} not in: {}".format(key, list(checkpoints_df))
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)
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ascending = not desc
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checkpoints_df = checkpoints_df.sort_values(by=sort, ascending=ascending)
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if limit:
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checkpoints_df = checkpoints_df[:limit]
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print_format_output(checkpoints_df)
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if output:
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file_extension = os.path.splitext(output)[1].lower()
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if file_extension in (".p", ".pkl", ".pickle"):
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checkpoints_df.to_pickle(output)
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elif file_extension == ".csv":
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checkpoints_df.to_csv(output, index=False)
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else:
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raise click.ClickException("Unsupported filetype: {}".format(output))
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click.secho("Output saved at {}".format(output), fg="green")
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def list_experiments(
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project_path: str,
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sort: Optional[List[str]] = None,
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output: str = None,
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filter_op: str = None,
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info_keys: Optional[List[str]] = None,
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limit: int = None,
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desc: bool = False,
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):
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"""Lists experiments in the directory subtree.
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Args:
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project_path: Directory where experiments are located.
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Corresponds to Experiment.local_dir.
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sort: Keys to sort by.
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output: Name of file where output is saved.
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filter_op: Filter operation in the format
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"<column> <operator> <value>".
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info_keys: Keys that are displayed.
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limit: Number of rows to display.
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desc: Sort ascending vs. descending.
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"""
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_check_tabulate()
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base, experiment_folders, _ = next(os.walk(project_path))
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experiment_data_collection = []
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for experiment_dir in experiment_folders:
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num_trials = sum(
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EXPR_RESULT_FILE in files
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for _, _, files in os.walk(os.path.join(base, experiment_dir))
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)
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experiment_data = {"name": experiment_dir, "total_trials": num_trials}
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experiment_data_collection.append(experiment_data)
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if not experiment_data_collection:
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raise click.ClickException("No experiments found!")
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info_df = pd.DataFrame(experiment_data_collection)
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if not info_keys:
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info_keys = DEFAULT_PROJECT_INFO_KEYS
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col_keys = [k for k in list(info_keys) if k in info_df]
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if not col_keys:
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raise click.ClickException(
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"None of keys {} in experiment data!".format(info_keys)
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)
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info_df = info_df[col_keys]
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if filter_op:
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col, op, val = filter_op.split(" ")
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col_type = info_df[col].dtype
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if is_numeric_dtype(col_type):
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val = float(val)
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elif is_string_dtype(col_type):
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val = str(val)
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# TODO(Andrew): add support for datetime and boolean
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else:
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raise click.ClickException(
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"Unsupported dtype for {}: {}".format(val, col_type)
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)
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op = OPERATORS[op]
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filtered_index = op(info_df[col], val)
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info_df = info_df[filtered_index]
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if sort:
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for key in sort:
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if key not in info_df:
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raise click.ClickException("{} not in: {}".format(key, list(info_df)))
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ascending = not desc
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info_df = info_df.sort_values(by=sort, ascending=ascending)
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if limit:
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info_df = info_df[:limit]
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print_format_output(info_df)
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if output:
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file_extension = os.path.splitext(output)[1].lower()
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if file_extension in (".p", ".pkl", ".pickle"):
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info_df.to_pickle(output)
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elif file_extension == ".csv":
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info_df.to_csv(output, index=False)
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else:
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raise click.ClickException("Unsupported filetype: {}".format(output))
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click.secho("Output saved at {}".format(output), fg="green")
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def add_note(path: str, filename: str = "note.txt"):
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"""Opens a txt file at the given path where user can add and save notes.
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Args:
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path: Directory where note will be saved.
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filename: Name of note. Defaults to "note.txt"
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"""
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path = Path(path).expanduser()
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assert path.is_dir(), "{} is not a valid directory.".format(path)
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filepath = path / filename
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try:
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subprocess.call([EDITOR, filepath.as_posix()])
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except Exception as exc:
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click.secho("Editing note failed: {}".format(str(exc)), fg="red")
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if filepath.exists():
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print("Note updated at:", filepath.as_posix())
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else:
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print("Note created at:", filepath.as_posix())
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