973 lines
33 KiB
Python
973 lines
33 KiB
Python
# Copyright (c) 2023 PaddlePaddle Authors. All Rights Reserved.
|
|
#
|
|
# Licensed under the Apache License, Version 2.0 (the "License");
|
|
# you may not use this file except in compliance with the License.
|
|
# You may obtain a copy of the License at
|
|
#
|
|
# http://www.apache.org/licenses/LICENSE-2.0
|
|
#
|
|
# Unless required by applicable law or agreed to in writing, software
|
|
# distributed under the License is distributed on an "AS IS" BASIS,
|
|
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
|
# See the License for the specific language governing permissions and
|
|
# limitations under the License.
|
|
|
|
# https://github.com/NVIDIA/Megatron-LM/blob/060415572f4365a2e895f8036c4e37dad0efbdf5/megatron/data/indexed_dataset.py
|
|
# Copyright (c) Facebook, Inc. and its affiliates.
|
|
#
|
|
# This source code is licensed under the MIT license found in the
|
|
# LICENSE file in the root directory of this source tree.
|
|
|
|
|
|
# copied from fairseq/fairseq/data/indexed_dataset.py
|
|
# Removed IndexedRawTextDataset since it relied on Fairseq dictionary
|
|
# other slight modifications to remove fairseq dependencies
|
|
# Added document index to index file and made it accessible.
|
|
# An empty sentence no longer separates documents.
|
|
|
|
import os
|
|
import shutil
|
|
import struct
|
|
import time
|
|
from dataclasses import fields
|
|
from functools import lru_cache
|
|
from itertools import accumulate
|
|
|
|
import numpy as np
|
|
import paddle
|
|
|
|
|
|
def print_rank_0(*args, **kwargs):
|
|
if paddle.distributed.get_rank() == 0:
|
|
print(*args, **kwargs)
|
|
|
|
|
|
def __best_fitting_dtype(vocab_size=None):
|
|
if vocab_size is not None and vocab_size < 65500:
|
|
return np.uint16
|
|
else:
|
|
return np.int32
|
|
|
|
|
|
def get_available_dataset_impl():
|
|
return ["lazy", "mmap"]
|
|
|
|
|
|
def make_dataset(path, impl, skip_warmup=False):
|
|
if CompatibleIndexedDataset.exists(path):
|
|
print("Using old dataset (.npy & .npz)")
|
|
return CompatibleIndexedDataset(path)
|
|
elif not IndexedDataset.exists(path):
|
|
print(f"Dataset does not exist: {path}")
|
|
print("Path should be a basename that both .idx and .bin can be appended to get full filenames.")
|
|
return None
|
|
elif impl == "lazy" and IndexedDataset.exists(path):
|
|
return IndexedDataset(path)
|
|
elif impl == "mmap" and MMapIndexedDataset.exists(path):
|
|
return MMapIndexedDataset(path, skip_warmup)
|
|
print(f"Unknown dataset implementation: {impl}")
|
|
return None
|
|
|
|
|
|
def make_sft_dataset(path, dataclass, skip_warmup=False, impl="mmap"):
|
|
if impl != "mmap":
|
|
raise ValueError("SFT Indexed Dataset only support mmap memory-mapped method temporarily")
|
|
|
|
print_rank_0(" > building dataset index ...")
|
|
start_time = time.time()
|
|
sft_indexed_dataset = SFTMMapIndexedDataset(path, dataclass, skip_warmup)
|
|
print_rank_0(" > finished creating SFT indexed dataset in {:4f} " "seconds".format(time.time() - start_time))
|
|
print_rank_0(" number of samples: {}".format(len(sft_indexed_dataset.doc_idx) - 1))
|
|
|
|
return sft_indexed_dataset
|
|
|
|
|
|
def dataset_exists(path, impl):
|
|
if impl == "mmap":
|
|
return MMapIndexedDataset.exists(path)
|
|
else:
|
|
return IndexedDataset.exists(path)
|
|
|
|
|
|
def read_longs(f, n):
|
|
a = np.empty(n, dtype=np.int64)
|
|
f.readinto(a)
|
|
return a
|
|
|
|
|
|
def write_longs(f, a):
|
|
f.write(np.array(a, dtype=np.int64))
|
|
|
|
|
|
def read_shorts(f, n):
|
|
a = np.empty(n, dtype=np.int32)
|
|
f.readinto(a)
|
|
return a
|
|
|
|
|
|
def write_shorts(f, a):
|
|
f.write(np.array(a, dtype=np.int32))
|
|
|
|
|
|
dtypes = {
|
|
1: np.uint8,
|
|
2: np.int8,
|
|
3: np.int16,
|
|
4: np.int32,
|
|
5: np.int64,
|
|
6: np.float64,
|
|
7: np.float32,
|
|
8: np.uint16,
|
|
9: np.uint32,
|
|
10: np.uint64,
|
|
}
|
|
|
|
|
|
def code(dtype):
|
|
for k in dtypes.keys():
|
|
if dtypes[k] == dtype:
|
|
return k
|
|
raise ValueError(dtype)
|
|
|
|
|
|
def index_file_path(prefix_path):
|
|
return prefix_path + ".idx"
|
|
|
|
|
|
def sft_index_file_path(prefix_path):
|
|
return os.path.join(prefix_path, "index.idx")
|
|
|
|
|
|
def sft_data_file_path(prefix_path, dataclass):
|
|
file_path_list = []
|
|
for field in fields(dataclass):
|
|
file_path = os.path.join(prefix_path, f"{field.name}.bin")
|
|
file_path_list.append(file_path)
|
|
return file_path_list
|
|
|
|
|
|
def data_file_path(prefix_path):
|
|
return prefix_path + ".bin"
|
|
|
|
|
|
def loss_mask_file_path(prefix_path):
|
|
return prefix_path + ".lsm"
|
|
|
|
|
|
def create_doc_idx(sizes):
|
|
doc_idx = [0]
|
|
for i, s in enumerate(sizes):
|
|
if s == 0:
|
|
doc_idx.append(i + 1)
|
|
return doc_idx
|
|
|
|
|
|
class IndexedDataset(paddle.io.Dataset):
|
|
"""Loader for IndexedDataset"""
|
|
|
|
_HDR_MAGIC = b"TNTIDX\x00\x00"
|
|
|
|
def __init__(self, path):
|
|
super().__init__()
|
|
self.path = path
|
|
self.data_file = None
|
|
self.read_index(path)
|
|
|
|
def read_index(self, path):
|
|
with open(index_file_path(path), "rb") as f:
|
|
magic = f.read(8)
|
|
assert magic == self._HDR_MAGIC, (
|
|
"Index file doesn't match expected format. " "Make sure that --dataset-impl is configured properly."
|
|
)
|
|
version = f.read(8)
|
|
assert struct.unpack("<Q", version) == (1,)
|
|
code, self.element_size = struct.unpack("<QQ", f.read(16))
|
|
self.dtype = dtypes[code]
|
|
self._len, self.s = struct.unpack("<QQ", f.read(16))
|
|
self.doc_count = struct.unpack("<Q", f.read(8))
|
|
self.dim_offsets = read_longs(f, self._len + 1)
|
|
self.data_offsets = read_longs(f, self._len + 1)
|
|
self.sizes = read_shorts(f, self.s)
|
|
self._doc_idx = read_longs(f, self.doc_count)
|
|
|
|
def read_data(self, path):
|
|
self.data_file = open(data_file_path(path), "rb", buffering=0)
|
|
|
|
def check_index(self, i):
|
|
if i < 0 or i >= self._len:
|
|
raise IndexError("index out of range")
|
|
|
|
def __del__(self):
|
|
if self.data_file:
|
|
self.data_file.close()
|
|
|
|
# @lru_cache(maxsize=8)
|
|
def __getitem__(self, idx):
|
|
if not self.data_file:
|
|
self.read_data(self.path)
|
|
if isinstance(idx, int):
|
|
i = idx
|
|
self.check_index(i)
|
|
tensor_size = self.sizes[self.dim_offsets[i] : self.dim_offsets[i + 1]]
|
|
a = np.empty(tensor_size, dtype=self.dtype)
|
|
self.data_file.seek(self.data_offsets[i] * self.element_size)
|
|
self.data_file.readinto(a)
|
|
return a
|
|
elif isinstance(idx, slice):
|
|
start, stop, step = idx.indices(len(self))
|
|
if step != 1:
|
|
raise ValueError("Slices into indexed_dataset must be contiguous")
|
|
sizes = self.sizes[self.dim_offsets[start] : self.dim_offsets[stop]]
|
|
size = sum(sizes)
|
|
a = np.empty(size, dtype=self.dtype)
|
|
self.data_file.seek(self.data_offsets[start] * self.element_size)
|
|
self.data_file.readinto(a)
|
|
offsets = list(accumulate(sizes))
|
|
sents = np.split(a, offsets[:-1])
|
|
return sents
|
|
|
|
def get(self, idx, offset=0, length=None):
|
|
"""Retrieves a single item from the dataset with the option to only
|
|
return a portion of the item.
|
|
|
|
get(idx) is the same as [idx] but get() does not support slicing.
|
|
"""
|
|
if not self.data_file:
|
|
self.read_data(self.path)
|
|
size = self.sizes[idx]
|
|
ptr = self.data_offsets[idx]
|
|
if length is None:
|
|
length = size - offset
|
|
ptr += offset
|
|
a = np.empty(length, dtype=self.dtype)
|
|
self.data_file.seek(ptr * self.element_size)
|
|
self.data_file.readinto(a)
|
|
return a
|
|
|
|
def __len__(self):
|
|
return self._len
|
|
|
|
def num_tokens(self, index):
|
|
return self.sizes[index]
|
|
|
|
def size(self, index):
|
|
return self.sizes[index]
|
|
|
|
@staticmethod
|
|
def exists(path):
|
|
return os.path.exists(index_file_path(path)) and os.path.exists(data_file_path(path))
|
|
|
|
@property
|
|
def supports_prefetch(self):
|
|
return False # avoid prefetching to save memory
|
|
|
|
@property
|
|
def doc_idx(self):
|
|
return self._doc_idx
|
|
|
|
def get_doc_idx(self):
|
|
return self._doc_idx
|
|
|
|
def set_doc_idx(self, doc_idx_):
|
|
self._doc_idx = doc_idx_
|
|
|
|
|
|
class IndexedDatasetBuilder(object):
|
|
element_sizes = {
|
|
np.uint8: 1,
|
|
np.int8: 1,
|
|
np.int16: 2,
|
|
np.uint16: 2,
|
|
np.int32: 4,
|
|
np.int64: 8,
|
|
np.float32: 4,
|
|
np.float64: 8,
|
|
}
|
|
|
|
def __init__(self, out_file, dtype=np.int32):
|
|
self.out_file = open(out_file, "wb")
|
|
self.dtype = dtype
|
|
self.data_offsets = [0]
|
|
self.dim_offsets = [0]
|
|
self.sizes = []
|
|
self.element_size = self.element_sizes[self.dtype]
|
|
self.doc_idx = [0]
|
|
|
|
def add_item(self, tensor):
|
|
tensor = np.array(tensor, dtype=self.dtype)
|
|
bytes = self.out_file.write(tensor)
|
|
self.data_offsets.append(self.data_offsets[-1] + bytes / self.element_size)
|
|
for s in tensor.shape:
|
|
self.sizes.append(s)
|
|
self.dim_offsets.append(self.dim_offsets[-1] + len(tensor.shape))
|
|
del bytes
|
|
|
|
def end_document(self):
|
|
self.doc_idx.append(len(self.sizes))
|
|
|
|
def merge_file_(self, another_file):
|
|
index = IndexedDataset(another_file)
|
|
assert index.dtype == self.dtype
|
|
|
|
doc_offset = len(self.sizes)
|
|
|
|
begin = self.data_offsets[-1]
|
|
for data_offset in index.data_offsets[1:]:
|
|
self.data_offsets.append(begin + data_offset)
|
|
self.sizes.extend(index.sizes)
|
|
|
|
begin = self.dim_offsets[-1]
|
|
for dim_offset in index.dim_offsets[1:]:
|
|
self.dim_offsets.append(begin + dim_offset)
|
|
|
|
self.doc_idx.extend((doc_offset + index.doc_idx)[1:])
|
|
|
|
with open(data_file_path(another_file), "rb") as f:
|
|
while True:
|
|
data = f.read(1024)
|
|
if data:
|
|
self.out_file.write(data)
|
|
else:
|
|
break
|
|
|
|
def finalize(self, index_file):
|
|
self.out_file.close()
|
|
index = open(index_file, "wb")
|
|
index.write(b"TNTIDX\x00\x00")
|
|
index.write(struct.pack("<Q", 1))
|
|
index.write(struct.pack("<QQ", code(self.dtype), self.element_size))
|
|
index.write(struct.pack("<QQ", len(self.data_offsets) - 1, len(self.sizes)))
|
|
index.write(struct.pack("<Q", len(self.doc_idx)))
|
|
write_longs(index, self.dim_offsets)
|
|
write_longs(index, self.data_offsets)
|
|
write_shorts(index, self.sizes)
|
|
write_longs(index, self.doc_idx)
|
|
index.close()
|
|
|
|
print("Total sentences num: %d" % len(self.sizes))
|
|
print("Total documents num: %d" % (len(self.doc_idx) - 1))
|
|
print("Total tokens num: %d" % sum(self.sizes))
|
|
print("Average tokens per sentence: %.2f" % (sum(self.sizes) / len(self.sizes)))
|
|
print("Average tokens per document: %.2f" % (sum(self.sizes) / (len(self.doc_idx) - 1)))
|
|
|
|
|
|
def _warmup_mmap_file(path):
|
|
with open(path, "rb") as stream:
|
|
while stream.read(100 * 1024 * 1024):
|
|
pass
|
|
|
|
|
|
class MMapIndexedDataset(paddle.io.Dataset):
|
|
class Index(object):
|
|
_HDR_MAGIC = b"MMIDIDX\x00\x00"
|
|
|
|
@classmethod
|
|
def writer(cls, path, dtype):
|
|
class _Writer(object):
|
|
def __enter__(self):
|
|
self._file = open(path, "wb")
|
|
|
|
self._file.write(cls._HDR_MAGIC)
|
|
self._file.write(struct.pack("<Q", 1))
|
|
self._file.write(struct.pack("<B", code(dtype)))
|
|
|
|
return self
|
|
|
|
@staticmethod
|
|
def _get_pointers(sizes):
|
|
dtype_size = dtype().itemsize
|
|
address = 0
|
|
pointers = []
|
|
|
|
for size in sizes:
|
|
pointers.append(address)
|
|
address += size * dtype_size
|
|
|
|
return pointers
|
|
|
|
def write(self, sizes, doc_idx):
|
|
pointers = self._get_pointers(sizes)
|
|
|
|
self._file.write(struct.pack("<Q", len(sizes)))
|
|
self._file.write(struct.pack("<Q", len(doc_idx)))
|
|
|
|
sizes = np.array(sizes, dtype=np.int32)
|
|
self._file.write(sizes.tobytes(order="C"))
|
|
del sizes
|
|
|
|
pointers = np.array(pointers, dtype=np.int64)
|
|
self._file.write(pointers.tobytes(order="C"))
|
|
del pointers
|
|
|
|
doc_idx = np.array(doc_idx, dtype=np.int64)
|
|
self._file.write(doc_idx.tobytes(order="C"))
|
|
|
|
def __exit__(self, exc_type, exc_val, exc_tb):
|
|
self._file.close()
|
|
|
|
return _Writer()
|
|
|
|
def __init__(self, path, skip_warmup=False):
|
|
with open(path, "rb") as stream:
|
|
magic_test = stream.read(9)
|
|
assert self._HDR_MAGIC == magic_test, (
|
|
"Index file doesn't match expected format. "
|
|
"Make sure that --dataset-impl is configured properly."
|
|
)
|
|
version = struct.unpack("<Q", stream.read(8))
|
|
assert (1,) == version
|
|
|
|
(dtype_code,) = struct.unpack("<B", stream.read(1))
|
|
self._dtype = dtypes[dtype_code]
|
|
self._dtype_size = self._dtype().itemsize
|
|
|
|
self._len = struct.unpack("<Q", stream.read(8))[0]
|
|
self._doc_count = struct.unpack("<Q", stream.read(8))[0]
|
|
offset = stream.tell()
|
|
|
|
if not skip_warmup:
|
|
print_rank_0(" warming up index mmap file...")
|
|
_warmup_mmap_file(path)
|
|
|
|
self._buffer_mmap = np.memmap(path, mode="r", order="C")
|
|
self._buffer = memoryview(self._buffer_mmap)
|
|
print_rank_0(" reading sizes...")
|
|
self._sizes = np.frombuffer(self._buffer, dtype=np.int32, count=self._len, offset=offset)
|
|
print_rank_0(" reading pointers...")
|
|
self._pointers = np.frombuffer(
|
|
self._buffer, dtype=np.int64, count=self._len, offset=offset + self._sizes.nbytes
|
|
)
|
|
print_rank_0(" reading document index...")
|
|
self._doc_idx = np.frombuffer(
|
|
self._buffer,
|
|
dtype=np.int64,
|
|
count=self._doc_count,
|
|
offset=offset + self._sizes.nbytes + self._pointers.nbytes,
|
|
)
|
|
|
|
def __del__(self):
|
|
self._buffer_mmap._mmap.close()
|
|
del self._buffer_mmap
|
|
|
|
@property
|
|
def dtype(self):
|
|
return self._dtype
|
|
|
|
@property
|
|
def sizes(self):
|
|
return self._sizes
|
|
|
|
@property
|
|
def doc_idx(self):
|
|
return self._doc_idx
|
|
|
|
@lru_cache(maxsize=8)
|
|
def __getitem__(self, i):
|
|
return self._pointers[i], self._sizes[i]
|
|
|
|
def __len__(self):
|
|
return self._len
|
|
|
|
def __init__(self, path, skip_warmup=False):
|
|
super().__init__()
|
|
|
|
self._path = None
|
|
self._index = None
|
|
self._bin_buffer = None
|
|
self._loss_mask_buffer = None
|
|
|
|
self._do_init(path, skip_warmup)
|
|
|
|
def __getstate__(self):
|
|
return self._path
|
|
|
|
def __setstate__(self, state):
|
|
self._do_init(state, skip_warmup=True)
|
|
|
|
def _do_init(self, path, skip_warmup):
|
|
self._path = path
|
|
|
|
if not self.exists(path):
|
|
raise ValueError("Missing file, %s" % (path))
|
|
|
|
self._index = self.Index(index_file_path(self._path), skip_warmup)
|
|
|
|
if not skip_warmup:
|
|
print_rank_0(" warming up data mmap file...")
|
|
_warmup_mmap_file(data_file_path(self._path))
|
|
print_rank_0(" creating numpy buffer of mmap...")
|
|
self._bin_buffer_mmap = np.memmap(data_file_path(self._path), mode="r", order="C")
|
|
if os.path.exists(loss_mask_file_path(self._path)):
|
|
self._loss_mask_buffer_mmap = np.memmap(loss_mask_file_path(self._path), mode="r", order="C")
|
|
self._loss_mask_buffer = memoryview(self._loss_mask_buffer_mmap)
|
|
print_rank_0(" creating memory view of numpy buffer...")
|
|
self._bin_buffer = memoryview(self._bin_buffer_mmap)
|
|
|
|
def __del__(self):
|
|
self._bin_buffer_mmap._mmap.close()
|
|
if hasattr(self, "_loss_mask_buffer_mmap"):
|
|
self._loss_mask_buffer_mmap._mmap.close()
|
|
del self._bin_buffer_mmap
|
|
del self._loss_mask_buffer
|
|
del self._index
|
|
|
|
def __len__(self):
|
|
return len(self._index)
|
|
|
|
# @lru_cache(maxsize=8)
|
|
def __getitem__(self, idx):
|
|
if isinstance(idx, (int, np.integer)):
|
|
ptr, size = self._index[idx]
|
|
np_array = np.frombuffer(self._bin_buffer, dtype=self._index.dtype, count=size, offset=ptr)
|
|
return np_array
|
|
elif isinstance(idx, slice):
|
|
start, stop, step = idx.indices(len(self))
|
|
if step != 1:
|
|
raise ValueError("Slices into indexed_dataset must be contiguous")
|
|
ptr = self._index._pointers[start]
|
|
sizes = self._index._sizes[idx]
|
|
offsets = list(accumulate(sizes))
|
|
total_size = sum(sizes)
|
|
np_array = np.frombuffer(self._bin_buffer, dtype=self._index.dtype, count=total_size, offset=ptr)
|
|
sents = np.split(np_array, offsets[:-1])
|
|
return sents
|
|
else:
|
|
raise TypeError("Unexpected type received for idx: {}".format(type(idx)))
|
|
|
|
def get(self, idx, offset=0, length=None):
|
|
"""Retrieves a single item from the dataset with the option to only
|
|
return a portion of the item.
|
|
|
|
get(idx) is the same as [idx] but get() does not support slicing.
|
|
"""
|
|
ptr, size = self._index[idx]
|
|
if length is None:
|
|
length = size - offset
|
|
ptr += offset * np.dtype(self._index.dtype).itemsize
|
|
mask_ptr = ptr // np.dtype(self._index.dtype).itemsize
|
|
np_array = np.frombuffer(self._bin_buffer, dtype=self._index.dtype, count=length, offset=ptr)
|
|
mask_array = None
|
|
if self._loss_mask_buffer is not None:
|
|
mask_array = np.frombuffer(self._loss_mask_buffer, dtype=np.uint8, count=length, offset=mask_ptr)
|
|
return np_array, mask_array
|
|
|
|
@property
|
|
def sizes(self):
|
|
return self._index.sizes
|
|
|
|
@property
|
|
def doc_idx(self):
|
|
return self._index.doc_idx
|
|
|
|
def get_doc_idx(self):
|
|
return self._index._doc_idx
|
|
|
|
def set_doc_idx(self, doc_idx_):
|
|
self._index._doc_idx = doc_idx_
|
|
|
|
@property
|
|
def supports_prefetch(self):
|
|
return False
|
|
|
|
@staticmethod
|
|
def exists(path):
|
|
return os.path.exists(index_file_path(path)) and os.path.exists(data_file_path(path))
|
|
|
|
|
|
class SFTMMapIndexedDataset(paddle.io.Dataset):
|
|
class Index(object):
|
|
_HDR_MAGIC = b"MMIDIDX\x00\x00"
|
|
|
|
@classmethod
|
|
def writer(cls, path, dtype):
|
|
class _Writer(object):
|
|
def __enter__(self):
|
|
self._file = open(path, "wb")
|
|
self._file.write(cls._HDR_MAGIC)
|
|
self._file.write(struct.pack("<Q", 1))
|
|
self._file.write(struct.pack("<B", code(dtype)))
|
|
|
|
return self
|
|
|
|
@staticmethod
|
|
def _get_pointers(sizes):
|
|
dtype_size = dtype().itemsize
|
|
address = 0
|
|
pointers = []
|
|
for size in sizes:
|
|
pointers.append(address)
|
|
address += size * dtype_size
|
|
return pointers
|
|
|
|
def write(self, sizes, doc_idx):
|
|
|
|
pointers = self._get_pointers(sizes)
|
|
self._file.write(struct.pack("<Q", len(sizes)))
|
|
self._file.write(struct.pack("<Q", len(doc_idx)))
|
|
|
|
sizes = np.array(sizes, dtype=np.int32)
|
|
self._file.write(sizes.tobytes(order="C"))
|
|
del sizes
|
|
|
|
pointers = np.array(pointers, dtype=np.int64)
|
|
self._file.write(pointers.tobytes(order="C"))
|
|
del pointers
|
|
|
|
doc_idx = np.array(doc_idx, dtype=np.int64)
|
|
self._file.write(doc_idx.tobytes(order="C"))
|
|
|
|
def __exit__(self, exc_type, exc_val, exc_tb):
|
|
self._file.close()
|
|
|
|
return _Writer()
|
|
|
|
def __init__(self, path, skip_warmup=False):
|
|
with open(path, "rb") as stream:
|
|
magic_test = stream.read(9)
|
|
assert self._HDR_MAGIC == magic_test, (
|
|
"Index file doesn't match expected format. "
|
|
"Make sure that --dataset-impl is configured properly."
|
|
)
|
|
version = struct.unpack("<Q", stream.read(8))
|
|
assert (1,) == version
|
|
|
|
(dtype_code,) = struct.unpack("<B", stream.read(1))
|
|
self._dtype = dtypes[dtype_code]
|
|
self._dtype_size = self._dtype().itemsize
|
|
|
|
self._len = struct.unpack("<Q", stream.read(8))[0]
|
|
self._doc_count = struct.unpack("<Q", stream.read(8))[0]
|
|
offset = stream.tell()
|
|
|
|
if not skip_warmup:
|
|
print_rank_0(" warming up index mmap file...")
|
|
_warmup_mmap_file(path)
|
|
|
|
self._buffer_mmap = np.memmap(path, mode="r", order="C")
|
|
self._buffer = memoryview(self._buffer_mmap)
|
|
print_rank_0(" reading sizes...")
|
|
self._sizes = np.frombuffer(self._buffer, dtype=np.int32, count=self._len, offset=offset)
|
|
print_rank_0(" reading pointers...")
|
|
self._pointers = np.frombuffer(
|
|
self._buffer, dtype=np.int64, count=self._len, offset=offset + self._sizes.nbytes
|
|
)
|
|
print_rank_0(" reading document index...")
|
|
self._doc_idx = np.frombuffer(
|
|
self._buffer,
|
|
dtype=np.int64,
|
|
count=self._doc_count,
|
|
offset=offset + self._sizes.nbytes + self._pointers.nbytes,
|
|
)
|
|
|
|
def __del__(self):
|
|
self._buffer_mmap._mmap.close()
|
|
del self._buffer_mmap
|
|
|
|
@property
|
|
def dtype(self):
|
|
return self._dtype
|
|
|
|
@property
|
|
def sizes(self):
|
|
return self._sizes
|
|
|
|
@property
|
|
def doc_idx(self):
|
|
return self._doc_idx
|
|
|
|
@lru_cache(maxsize=8)
|
|
def __getitem__(self, i):
|
|
return self._pointers[i], self._sizes[i]
|
|
|
|
def __len__(self):
|
|
return self._doc_count - 1
|
|
|
|
def __init__(self, path, dataclass, skip_warmup=False):
|
|
super().__init__()
|
|
self._dataclass = dataclass
|
|
self._path = None
|
|
self._index = None
|
|
self._bin_buffer = None
|
|
|
|
self._do_init(path, skip_warmup)
|
|
|
|
def __getstate__(self):
|
|
return self._path
|
|
|
|
def __setstate__(self, state):
|
|
self._do_init(state, skip_warmup=True)
|
|
|
|
def _do_init(self, path, skip_warmup):
|
|
self._path = path
|
|
if not self.exists(path, self._dataclass):
|
|
raise ValueError("Missing file, %s" % (path))
|
|
|
|
self._index = self.Index(sft_index_file_path(self._path), skip_warmup)
|
|
if not skip_warmup:
|
|
print_rank_0(" warming up data mmap file...")
|
|
for data_file in sft_data_file_path(self._path, self._dataclass):
|
|
_warmup_mmap_file(data_file)
|
|
print_rank_0(" creating numpy buffer of mmap...")
|
|
|
|
self._bin_buffer_mmap_dict = {}
|
|
self._bin_buffer_dict = {}
|
|
for data_file in sft_data_file_path(self._path, self._dataclass):
|
|
self._bin_buffer_mmap_dict[data_file] = np.memmap(data_file, mode="r", order="C")
|
|
self._bin_buffer_dict[data_file] = memoryview(self._bin_buffer_mmap_dict[data_file])
|
|
print_rank_0(" creating memory view of numpy buffer...")
|
|
|
|
def __del__(self):
|
|
for key, value in self._bin_buffer_mmap_dict.items():
|
|
value._mmap.close()
|
|
for key, value in self._bin_buffer_dict.items():
|
|
del value
|
|
del self._index
|
|
|
|
def __len__(self):
|
|
return len(self._index)
|
|
|
|
def __getitem__(self, idx):
|
|
def get_index(idx):
|
|
doc_idx = self._index.doc_idx
|
|
start_sentence, end_sentence = doc_idx[idx], doc_idx[idx + 1]
|
|
start_pointers, _ = self._index[start_sentence]
|
|
length_list = self._index._sizes[start_sentence:end_sentence]
|
|
|
|
dataclass_fields = fields(self._dataclass)
|
|
dataclass_list = []
|
|
sequence_offset = start_pointers
|
|
scalar_offset = doc_idx[idx] * np.dtype(self._index.dtype).itemsize
|
|
|
|
for length in length_list:
|
|
field_data = {field.name: [] for field in dataclass_fields}
|
|
for field in dataclass_fields:
|
|
bin_buffer = self._bin_buffer_dict[os.path.join(self._path, f"{field.name}.bin")]
|
|
if field.type != int:
|
|
data = np.frombuffer(bin_buffer, dtype=self._index.dtype, count=length, offset=sequence_offset)
|
|
field_data[field.name] = data.tolist()
|
|
else:
|
|
data = np.frombuffer(bin_buffer, dtype=self._index.dtype, count=1, offset=scalar_offset)
|
|
field_data[field.name] = int(data[0])
|
|
|
|
dataclass_list.append(self._dataclass(**field_data))
|
|
|
|
sequence_offset += length * np.dtype(self._index.dtype).itemsize
|
|
scalar_offset += np.dtype(self._index.dtype).itemsize
|
|
return dataclass_list
|
|
|
|
if isinstance(idx, (int, np.integer)):
|
|
return get_index(idx)
|
|
elif isinstance(idx, slice):
|
|
start, stop, step = idx.indices(len(self))
|
|
if step != 1:
|
|
raise ValueError("Slices into indexed_dataset must be contiguous")
|
|
return [get_index(idx) for idx in range(start, stop)]
|
|
|
|
@property
|
|
def sizes(self):
|
|
return self._index.sizes
|
|
|
|
@property
|
|
def doc_idx(self):
|
|
return self._index.doc_idx
|
|
|
|
def get_doc_idx(self):
|
|
return self._index._doc_idx
|
|
|
|
def set_doc_idx(self, doc_idx_):
|
|
self._index._doc_idx = doc_idx_
|
|
|
|
@property
|
|
def supports_prefetch(self):
|
|
return False
|
|
|
|
@staticmethod
|
|
def exists(path, dataclass):
|
|
file_path_list = sft_data_file_path(path, dataclass)
|
|
file_path_list.append(sft_index_file_path(path))
|
|
for file_path in file_path_list:
|
|
if not os.path.exists(file_path):
|
|
return False
|
|
return True
|
|
|
|
|
|
def make_builder(out_file, impl, save_dtype, loss_mask_file=None):
|
|
if impl == "mmap":
|
|
return MMapIndexedDatasetBuilder(out_file, dtype=save_dtype, loss_mask_file=loss_mask_file)
|
|
else:
|
|
return IndexedDatasetBuilder(out_file, dtype=save_dtype)
|
|
|
|
|
|
class SFTMMapIndexedDatasetBuilder(object):
|
|
def __init__(self, output_file_dict, dtype):
|
|
self._data_file_dict = {}
|
|
for key, filename in output_file_dict.items():
|
|
self._data_file_dict[key] = open(filename, "wb")
|
|
self.output_file_dict = output_file_dict
|
|
self._dtype = dtype
|
|
self._sizes = []
|
|
self._doc_idx = [0]
|
|
|
|
def add_item(self, sequence):
|
|
add_sequence_len = False
|
|
for key in self._data_file_dict.keys():
|
|
tensor = np.array(getattr(sequence, key), dtype=self._dtype)
|
|
if tensor.size > 1 and not add_sequence_len:
|
|
self._sizes.append(tensor.size)
|
|
add_sequence_len = True
|
|
self._data_file_dict[key].write(tensor.tobytes(order="C"))
|
|
|
|
def end_document(self):
|
|
self._doc_idx.append(len(self._sizes))
|
|
|
|
def finalize(self, index_file):
|
|
for key, filename in self._data_file_dict.items():
|
|
filename.close()
|
|
with SFTMMapIndexedDataset.Index.writer(index_file, self._dtype) as index:
|
|
index.write(self._sizes, self._doc_idx)
|
|
|
|
|
|
class MMapIndexedDatasetBuilder(object):
|
|
def __init__(self, out_file, dtype, loss_mask_file=None):
|
|
self._data_file = open(out_file, "wb")
|
|
self._loss_mask_file = None
|
|
if loss_mask_file is not None:
|
|
self._loss_mask_file = open(loss_mask_file, "wb")
|
|
self._dtype = dtype
|
|
self._sizes = []
|
|
self._doc_idx = [0]
|
|
|
|
def flush_loss_mask_item(self, loss_mask_lst):
|
|
for loss_mask in loss_mask_lst:
|
|
tensor = np.array(loss_mask, dtype=np.uint8)
|
|
self._loss_mask_file.write(tensor.tobytes(order="C"))
|
|
|
|
def add_item(self, tensor):
|
|
tensor = np.array(tensor, dtype=self._dtype)
|
|
self._data_file.write(tensor.tobytes(order="C"))
|
|
self._sizes.append(tensor.size)
|
|
|
|
def add_doc(self, tensor, sizes):
|
|
np_array = np.array(tensor, dtype=self._dtype)
|
|
self._data_file.write(np_array.tobytes(order="C"))
|
|
self._sizes.extend(sizes)
|
|
self._doc_idx.append(len(self._sizes))
|
|
|
|
def end_document(self):
|
|
self._doc_idx.append(len(self._sizes))
|
|
|
|
def merge_file_(self, another_file):
|
|
# Concatenate index
|
|
index = MMapIndexedDataset.Index(index_file_path(another_file))
|
|
assert index.dtype == self._dtype
|
|
|
|
offset = len(self._sizes)
|
|
self._sizes.extend(index.sizes)
|
|
self._doc_idx.extend((offset + index.doc_idx)[1:])
|
|
|
|
# Concatenate data
|
|
with open(data_file_path(another_file), "rb") as f:
|
|
shutil.copyfileobj(f, self._data_file)
|
|
|
|
def finalize(self, index_file):
|
|
self._data_file.close()
|
|
|
|
with MMapIndexedDataset.Index.writer(index_file, self._dtype) as index:
|
|
index.write(self._sizes, self._doc_idx)
|
|
print("Total sentences num: %d" % len(self._sizes))
|
|
print("Total documents num: %d" % (len(self._doc_idx) - 1))
|
|
print("Total tokens num: %d" % sum(self._sizes))
|
|
print("Average tokens per sentence: %.2f" % (sum(self._sizes) / len(self._sizes)))
|
|
print("Average tokens per document: %.2f" % (sum(self._sizes) / (len(self._doc_idx) - 1)))
|
|
|
|
|
|
def get_indexed_dataset_(data_prefix, data_impl, skip_warmup):
|
|
|
|
print_rank_0(" > building dataset index ...")
|
|
|
|
start_time = time.time()
|
|
indexed_dataset = make_dataset(data_prefix, data_impl, skip_warmup)
|
|
assert indexed_dataset.sizes.shape[0] == indexed_dataset.doc_idx[-1]
|
|
print_rank_0(" > finished creating indexed dataset in {:4f} " "seconds".format(time.time() - start_time))
|
|
|
|
print_rank_0(" > indexed dataset stats:")
|
|
print_rank_0(" number of documents: {}".format(indexed_dataset.doc_idx.shape[0] - 1))
|
|
print_rank_0(" number of sentences: {}".format(indexed_dataset.sizes.shape[0]))
|
|
|
|
return indexed_dataset
|
|
|
|
|
|
class CompatibleIndexedDataset(paddle.io.Dataset):
|
|
def __init__(self, path):
|
|
super().__init__()
|
|
|
|
self._path = path
|
|
|
|
# All document ids, extend as 1-D array.
|
|
self._token_ids = np.load(path + "_ids.npy", mmap_mode="r", allow_pickle=True)
|
|
process_data = np.load(path + "_idx.npz")
|
|
self._sizes = process_data["lens"]
|
|
self._pointers = np.empty(len(self._sizes) + 1, dtype=np.int64)
|
|
self._pointers[0] = 0
|
|
np.cumsum(self._sizes, out=self._pointers[1:])
|
|
self._doc_idx = process_data["docs"]
|
|
|
|
def __getstate__(self):
|
|
return self._path
|
|
|
|
def __len__(self):
|
|
return len(self._sizes)
|
|
|
|
# @lru_cache(maxsize=8)
|
|
def __getitem__(self, idx):
|
|
if isinstance(idx, int):
|
|
size = self._sizes[idx]
|
|
ptr = self._pointers[idx]
|
|
np_array = self._token_ids[ptr : ptr + size]
|
|
return np_array
|
|
|
|
elif isinstance(idx, slice):
|
|
start, stop, step = idx.indices(len(self))
|
|
if step != 1:
|
|
raise ValueError("Slices into indexed_dataset must be contiguous")
|
|
ptr = self._pointers[start]
|
|
sizes = self._sizes[idx]
|
|
offsets = list(accumulate(sizes))
|
|
total_size = sum(sizes)
|
|
np_array = self._token_ids[ptr : ptr + total_size]
|
|
sents = np.split(np_array, offsets[:-1])
|
|
return sents
|
|
|
|
def get(self, idx, offset=0, length=None):
|
|
"""Retrieves a single item from the dataset with the option to only
|
|
return a portion of the item.
|
|
|
|
get(idx) is the same as [idx] but get() does not support slicing.
|
|
"""
|
|
size = self._sizes[idx]
|
|
ptr = self._pointers[idx]
|
|
|
|
if length is None:
|
|
length = size - offset
|
|
ptr += offset
|
|
np_array = self._token_ids[ptr : ptr + length]
|
|
return np_array, None
|
|
|
|
@property
|
|
def sizes(self):
|
|
return self._sizes
|
|
|
|
@property
|
|
def doc_idx(self):
|
|
return self._doc_idx
|
|
|
|
def get_doc_idx(self):
|
|
return self._doc_idx
|
|
|
|
def set_doc_idx(self, doc_idx_):
|
|
self._doc_idx = doc_idx_
|
|
|
|
@staticmethod
|
|
def exists(path):
|
|
return os.path.isfile(path + "_ids.npy") and os.path.isfile(path + "_idx.npz")
|