261 lines
8.9 KiB
Python
261 lines
8.9 KiB
Python
# Copyright (c) 2021 PaddlePaddle Authors. All Rights Reserved.
|
|
#
|
|
# Licensed under the Apache License, Version 2.0 (the "License");
|
|
# you may not use this file except in compliance with the License.
|
|
# You may obtain a copy of the License at
|
|
#
|
|
# http://www.apache.org/licenses/LICENSE-2.0
|
|
#
|
|
# Unless required by applicable law or agreed to in writing, software
|
|
# distributed under the License is distributed on an "AS IS" BASIS,
|
|
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
|
# See the License for the specific language governing permissions and
|
|
# limitations under the License.
|
|
|
|
from __future__ import annotations
|
|
|
|
from collections.abc import Sequence
|
|
from typing import TYPE_CHECKING
|
|
|
|
import paddle
|
|
from paddle.distribution import distribution
|
|
from paddle.utils.decorator_utils import param_one_alias
|
|
|
|
if TYPE_CHECKING:
|
|
from paddle import Tensor
|
|
from paddle._typing.dtype_like import _DTypeLiteral
|
|
|
|
|
|
class Binomial(distribution.Distribution):
|
|
r"""
|
|
The Binomial distribution with size `total_count` and `probs` parameters.
|
|
|
|
In probability theory and statistics, the binomial distribution is the most basic discrete probability distribution defined on :math:`[0, n] \cap \mathbb{N}`,
|
|
which can be viewed as the number of times a potentially unfair coin is tossed to get heads, and the result
|
|
of its random variable can be viewed as the sum of a series of independent Bernoulli experiments.
|
|
|
|
The probability mass function (pmf) is
|
|
|
|
.. math::
|
|
|
|
pmf(x; n, p) = \frac{n!}{x!(n-x)!}p^{x}(1-p)^{n-x}
|
|
|
|
In the above equation:
|
|
|
|
* :math:`total\_count = n`: is the size, meaning the total number of Bernoulli experiments.
|
|
* :math:`probs = p`: is the probability of the event happening in one Bernoulli experiments.
|
|
|
|
Args:
|
|
total_count(int|Tensor): The size of Binomial distribution which should be greater than 0, meaning the number of independent bernoulli
|
|
trials with probability parameter :math:`p`. The data type will be converted to 1-D Tensor with paddle global default dtype if the input
|
|
:attr:`probs` is not Tensor, otherwise will be converted to the same as :attr:`probs`.
|
|
probs(float|Tensor): The probability of Binomial distribution which should reside in [0, 1], meaning the probability of success
|
|
for each individual bernoulli trial. If the input data type is float, it will be converted to a 1-D Tensor with paddle global default dtype.
|
|
|
|
Examples:
|
|
.. code-block:: pycon
|
|
|
|
>>> import paddle
|
|
>>> from paddle.distribution import Binomial
|
|
>>> paddle.set_device('cpu')
|
|
>>> paddle.seed(100)
|
|
>>> rv = Binomial(100, paddle.to_tensor([0.3, 0.6, 0.9]))
|
|
|
|
>>> print(rv.sample([2]))
|
|
Tensor(shape=[2, 3], dtype=float32, place=Place(cpu), stop_gradient=True,
|
|
[[31., 62., 93.],
|
|
[29., 54., 91.]])
|
|
|
|
>>> print(rv.mean)
|
|
Tensor(shape=[3], dtype=float32, place=Place(cpu), stop_gradient=True,
|
|
[30.00000191, 60.00000381, 90. ])
|
|
|
|
>>> print(rv.entropy())
|
|
Tensor(shape=[3], dtype=float32, place=Place(cpu), stop_gradient=True,
|
|
[2.94053698, 3.00781751, 2.51124287])
|
|
"""
|
|
|
|
dtype: _DTypeLiteral
|
|
total_count: Tensor
|
|
probs: Tensor
|
|
|
|
def __init__(
|
|
self, total_count: int | Tensor, probs: float | Tensor
|
|
) -> None:
|
|
self.dtype = paddle.get_default_dtype()
|
|
self.total_count, self.probs = self._to_tensor(total_count, probs)
|
|
|
|
batch_shape = self.total_count.shape
|
|
super().__init__(batch_shape)
|
|
|
|
def _to_tensor(
|
|
self, total_count: int | Tensor, probs: float | Tensor
|
|
) -> list[Tensor]:
|
|
"""Convert the input parameters into Tensors if they were not and broadcast them
|
|
|
|
Returns:
|
|
list[Tensor]: converted total_count and probs.
|
|
"""
|
|
# convert type
|
|
if isinstance(probs, float):
|
|
probs = paddle.to_tensor(probs, dtype=self.dtype)
|
|
else:
|
|
self.dtype = probs.dtype
|
|
if isinstance(total_count, int):
|
|
total_count = paddle.to_tensor(total_count, dtype=self.dtype)
|
|
else:
|
|
total_count = paddle.cast(total_count, dtype=self.dtype)
|
|
|
|
# broadcast tensor
|
|
return paddle.broadcast_tensors([total_count, probs])
|
|
|
|
@property
|
|
def mean(self) -> Tensor:
|
|
"""Mean of binomial distribution.
|
|
|
|
Returns:
|
|
Tensor: mean value.
|
|
"""
|
|
return self.total_count * self.probs
|
|
|
|
@property
|
|
def variance(self) -> Tensor:
|
|
"""Variance of binomial distribution.
|
|
|
|
Returns:
|
|
Tensor: variance value.
|
|
"""
|
|
return self.total_count * self.probs * (1 - self.probs)
|
|
|
|
@param_one_alias(["shape", "sample_shape"])
|
|
def sample(self, shape: Sequence[int] = []) -> Tensor:
|
|
"""Generate binomial samples of the specified shape. The final shape would be ``shape+batch_shape`` .
|
|
|
|
Args:
|
|
shape (Sequence[int], optional): Prepended shape of the generated samples.
|
|
|
|
Returns:
|
|
Tensor: Sampled data with shape `sample_shape` + `batch_shape`. The returned data type is the same as `probs`.
|
|
"""
|
|
if not isinstance(shape, Sequence):
|
|
raise TypeError('sample shape must be Sequence object.')
|
|
|
|
with paddle.set_grad_enabled(False):
|
|
shape = tuple(shape)
|
|
batch_shape = tuple(self.batch_shape)
|
|
output_shape = tuple(shape + batch_shape)
|
|
output_size = paddle.broadcast_to(
|
|
self.total_count, shape=output_shape
|
|
)
|
|
output_prob = paddle.broadcast_to(self.probs, shape=output_shape)
|
|
sample = paddle.binomial(
|
|
paddle.cast(output_size, dtype="int32"), output_prob
|
|
)
|
|
return paddle.cast(sample, self.dtype)
|
|
|
|
def entropy(self) -> Tensor:
|
|
r"""Shannon entropy in nats.
|
|
|
|
The entropy is
|
|
|
|
.. math::
|
|
|
|
\mathcal{H}(X) = - \sum_{x \in \Omega} p(x) \log{p(x)}
|
|
|
|
In the above equation:
|
|
|
|
* :math:`\Omega`: is the support of the distribution.
|
|
|
|
Returns:
|
|
Tensor: Shannon entropy of binomial distribution. The data type is the same as `probs`.
|
|
"""
|
|
values = self._enumerate_support()
|
|
log_prob = self.log_prob(values)
|
|
return -(paddle.exp(log_prob) * log_prob).sum(0)
|
|
|
|
def _enumerate_support(self) -> Tensor:
|
|
"""Return the support of binomial distribution [0, 1, ... ,n]
|
|
|
|
Returns:
|
|
Tensor: the support of binomial distribution
|
|
"""
|
|
values = paddle.arange(
|
|
1 + paddle.max(self.total_count), dtype=self.dtype
|
|
)
|
|
values = values.reshape((-1,) + (1,) * len(self.batch_shape))
|
|
return values
|
|
|
|
def log_prob(self, value: Tensor) -> Tensor:
|
|
"""Log probability density/mass function.
|
|
|
|
Args:
|
|
value (Tensor): The input tensor.
|
|
|
|
Returns:
|
|
Tensor: log probability. The data type is the same as `probs`.
|
|
"""
|
|
value = paddle.cast(value, dtype=self.dtype)
|
|
|
|
# combination
|
|
log_comb = (
|
|
paddle.lgamma(self.total_count + 1.0)
|
|
- paddle.lgamma(self.total_count - value + 1.0)
|
|
- paddle.lgamma(value + 1.0)
|
|
)
|
|
eps = paddle.finfo(self.probs.dtype).eps
|
|
probs = paddle.clip(self.probs, min=eps, max=1 - eps)
|
|
# log_p
|
|
return paddle.nan_to_num(
|
|
(
|
|
log_comb
|
|
+ value * paddle.log(probs)
|
|
+ (self.total_count - value) * paddle.log(1 - probs)
|
|
),
|
|
neginf=-eps,
|
|
)
|
|
|
|
def prob(self, value: Tensor) -> Tensor:
|
|
"""Probability density/mass function.
|
|
|
|
Args:
|
|
value (Tensor): The input tensor.
|
|
|
|
Returns:
|
|
Tensor: probability. The data type is the same as `probs`.
|
|
"""
|
|
return paddle.exp(self.log_prob(value))
|
|
|
|
def kl_divergence(self, other: Binomial) -> Tensor:
|
|
r"""The KL-divergence between two binomial distributions with the same :attr:`total_count`.
|
|
|
|
The probability density function (pdf) is
|
|
|
|
.. math::
|
|
|
|
KL\_divergence(n_1, p_1, n_2, p_2) = \sum_x p_1(x) \log{\frac{p_1(x)}{p_2(x)}}
|
|
|
|
.. math::
|
|
|
|
p_1(x) = \frac{n_1!}{x!(n_1-x)!}p_1^{x}(1-p_1)^{n_1-x}
|
|
|
|
.. math::
|
|
|
|
p_2(x) = \frac{n_2!}{x!(n_2-x)!}p_2^{x}(1-p_2)^{n_2-x}
|
|
|
|
Args:
|
|
other (Binomial): instance of ``Binomial``.
|
|
|
|
Returns:
|
|
Tensor: kl-divergence between two binomial distributions. The data type is the same as `probs`.
|
|
|
|
"""
|
|
support = self._enumerate_support()
|
|
log_prob_1 = self.log_prob(support)
|
|
log_prob_2 = other.log_prob(support)
|
|
return (
|
|
paddle.multiply(
|
|
paddle.exp(log_prob_1),
|
|
(paddle.subtract(log_prob_1, log_prob_2)),
|
|
)
|
|
).sum(0)
|