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237 lines
8.1 KiB
Python
237 lines
8.1 KiB
Python
import multiprocessing
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import os
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import traceback
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import pytest
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from nltk.metrics.segmentation import pk, windowdiff
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def test_basic_functionality():
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# Identical Segmentations
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assert windowdiff("0001000", "0001000", 3) == 0.0
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assert windowdiff("111", "111", 2) == 0.0
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# Completely Different Segmentations
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assert windowdiff("000", "111", 2) == 1.0
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assert windowdiff("010101", "101010", 3) == 1.0
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def test_boundary_marker_variations():
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# Different Boundary Markers
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assert windowdiff("aaaaba", "aaaaba", 3, boundary="b") == 0.0
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assert windowdiff("1110111", "1110111", 2, boundary="0") == 0.0
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def test_weighted_vs_unweighted():
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# Weighted Calculation
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assert windowdiff("0001000", "0000100", 3, weighted=True) == 0.4
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assert windowdiff("1110111", "1111011", 2, weighted=True) == 0.3333333333333333
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# Unweighted Calculation
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assert windowdiff("0001000", "0000100", 3, weighted=False) == 0.4
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assert windowdiff("1110111", "1111011", 2, weighted=False) == 0.3333333333333333
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def test_edge_cases():
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# Minimum Length Segmentations
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assert windowdiff("0", "0", 1) == 0.0
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assert windowdiff("1", "0", 1) == 1.0
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# Window Width Equal to Length
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assert windowdiff("000", "001", 3) == 1.0
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assert windowdiff("111", "110", 3) == 1.0
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def test_error_handling():
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# Unequal Lengths
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with pytest.raises(ValueError, match="Segmentations have unequal length"):
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windowdiff("000", "0000", 2)
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with pytest.raises(ValueError, match="Segmentations have unequal length"):
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windowdiff("1111", "111", 3)
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# Window Width Greater than Length
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with pytest.raises(
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ValueError,
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match="Window width k should be smaller or equal than segmentation lengths",
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):
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windowdiff("00", "00", 3)
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with pytest.raises(
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ValueError,
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match="Window width k should be smaller or equal than segmentation lengths",
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):
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windowdiff("111", "111", 4)
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def test_negative_window_width_rejected():
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"""A negative window width fails fast instead of raising IndexError mid-loop."""
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with pytest.raises(ValueError, match="Window width k should not be negative"):
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windowdiff("0000", "0000", -1)
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with pytest.raises(ValueError, match="Window width k should not be negative"):
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pk("0000", "0000", -1)
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def test_pk_rejects_unequal_length():
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"""pk rejects unequal-length inputs (like windowdiff) instead of IndexError."""
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with pytest.raises(ValueError, match="Segmentations have unequal length"):
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pk("000", "0000", 2)
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with pytest.raises(ValueError, match="Segmentations have unequal length"):
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pk("0000", "000", 2)
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def test_large_scale_cases():
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# Large Segmentations
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assert windowdiff("0" * 1000 + "1", "0" * 1000 + "1", 500) == 0.0
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assert windowdiff("01" * 500, "10" * 500, 100) == 0.0
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def test_mixed_content_segmentations():
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# Mixed Content
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assert windowdiff("0101010101", "1010101010", 4) == 0.0
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assert windowdiff("1100110011", "0011001100", 3) == 1.0
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def test_non_string_segmentations():
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# Lists as Segmentations
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assert windowdiff([0, 0, 1, 0, 0], [0, 0, 0, 1, 0], 3) == 0.0
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assert windowdiff([1, 1, 1, 0, 1], [1, 1, 0, 1, 1], 2) == 0.0
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def test_boundary_marker_as_non_string():
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# Integer Boundary Markers
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assert windowdiff([0, 0, 1, 0], [0, 1, 0, 0], 2, boundary=1) == 0.6666666666666666
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assert windowdiff([1, 1, 0, 1], [1, 0, 1, 1], 3, boundary=0) == 0.0
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def test_complex_patterns():
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# Complex Patterns
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assert windowdiff("001001001", "001001010", 3) == 0.14285714285714285
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assert windowdiff("111000111", "111111111", 4) == 1.0
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def test_pevzner_hearst_examples():
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"""Reference values from the windowdiff docstring (Pevzner & Hearst 2002)."""
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s1 = "000100000010"
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s2 = "000010000100"
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s3 = "100000010000"
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assert windowdiff(s1, s1, 3) == 0.0
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assert abs(windowdiff(s1, s2, 3) - 0.3) < 1e-6
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assert abs(windowdiff(s2, s3, 3) - 0.8) < 1e-6
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def test_symmetry():
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"""windowdiff(a, b, k) == windowdiff(b, a, k) for all inputs."""
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pairs = [
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("000100000010", "000010000100", 3),
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("100000010000", "000010000100", 3),
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("010101", "101010", 3),
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("0001000", "0000100", 3),
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("1110111", "1111011", 2),
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("001001001", "001001010", 3),
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]
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for seg1, seg2, k in pairs:
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assert windowdiff(seg1, seg2, k) == windowdiff(seg2, seg1, k)
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assert windowdiff(seg1, seg2, k, weighted=True) == windowdiff(
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seg2, seg1, k, weighted=True
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)
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def test_pk_reference_values():
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"""Reference values from the pk docstring (Beeferman's Pk)."""
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assert f"{pk('0100' * 100, '1' * 400, 2):.2f}" == "0.50"
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assert f"{pk('0100' * 100, '0' * 400, 2):.2f}" == "0.50"
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assert pk("0100" * 100, "0100" * 100, 2) == 0.0
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def test_pk_basic_and_default_window():
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"""pk on identical/disjoint inputs, and with the derived default window."""
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assert pk("0001000", "0001000", 3) == 0.0
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assert pk("000", "111", 2) == 1.0
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# k defaults to ~half the average reference segment length.
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assert pk("0100" * 100, "0100" * 100) == 0.0
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def _windowdiff_worker(n):
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"""Run windowdiff on a large half-window input; exit 0 ok, 3 on error."""
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try:
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seg = [0] * n
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windowdiff(seg, seg, n // 2, boundary=1)
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os._exit(0)
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except BaseException:
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traceback.print_exc()
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os._exit(3)
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def _pk_worker(n):
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"""Run pk on a large half-window input; exit 0 ok, 3 on error."""
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try:
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seg = [0] * n
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pk(seg, seg, n // 2, boundary=1)
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os._exit(0)
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except BaseException:
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traceback.print_exc()
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os._exit(3)
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def _finishes_within(target, n, deadline=30):
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"""Run target(n) in a spawned process; return (finished, exitcode)."""
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ctx = multiprocessing.get_context("spawn")
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proc = ctx.Process(target=target, args=(n,))
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proc.start()
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proc.join(deadline)
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if proc.is_alive():
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proc.terminate()
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proc.join()
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return False, None
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return True, proc.exitcode
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def test_windowdiff_is_linear_not_quadratic():
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"""A large half-window input must finish quickly (linear), not tie up a core.
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Run in a spawned process with a hard deadline: the incremental aligner
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returns in milliseconds, while the previous O(n*k) version needs over a
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minute at this size, so a regression is terminated instead of burning CPU.
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"""
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finished, exitcode = _finishes_within(_windowdiff_worker, 200_000)
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assert finished, "windowdiff did not finish in time: quadratic blow-up regressed"
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assert exitcode == 0, f"windowdiff worker failed (exit {exitcode})"
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def test_pk_is_linear_not_quadratic():
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"""Same linearity guard for the pk metric (identical per-position loop)."""
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finished, exitcode = _finishes_within(_pk_worker, 200_000)
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assert finished, "pk did not finish in time: quadratic blow-up regressed"
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assert exitcode == 0, f"pk worker failed (exit {exitcode})"
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def test_pk_boundary_free_reference_does_not_divide_by_zero():
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"""A boundary-free reference must not crash pk's default-window derivation.
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With no window size and a reference that contains no boundary symbol,
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``ref.count(boundary)`` is 0; pk previously raised an uncaught
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``ZeroDivisionError`` (CWE-369). It now derives a window and computes a score.
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"""
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# Identical boundary-free segmentations -> perfect agreement, no crash.
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assert pk("0" * 100, "0" * 100) == 0.0
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# A hyp that introduces a boundary still yields a valid score in [0, 1].
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score = pk("0" * 100, "0" * 50 + "1" + "0" * 49)
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assert 0.0 <= score <= 1.0
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def test_pk_default_window_unchanged_for_segmented_reference():
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"""The derived default window matches the historical formula when the
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reference has boundaries.
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Uses a case where the score is not trivially 0 (ref != hyp), so the
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assertion would fail if the default-``k`` derivation ever changed.
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"""
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ref = "0100" * 100
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hyp = "1" * 400
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# Historical default: round(len(ref) / (ref.count(boundary) * 2)).
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k = int(round(len(ref) / (ref.count("1") * 2.0)))
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assert k == 2
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default_score = pk(ref, hyp)
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assert default_score != 0.0 # non-trivial case: a changed window would differ
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assert default_score == pk(ref, hyp, k)
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