400 lines
14 KiB
Python
400 lines
14 KiB
Python
"""
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The ``mlflow.prophet`` module provides an API for logging and loading Prophet models.
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This module exports univariate Prophet models in the following flavors:
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Prophet (native) format
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This is the main flavor that can be accessed with Prophet APIs.
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:py:mod:`mlflow.pyfunc`
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Produced for use by generic pyfunc-based deployment tools and for batch auditing
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of historical forecasts.
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.. _Prophet:
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https://facebook.github.io/prophet/docs/quick_start.html#python-api
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"""
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import json
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import logging
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import os
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from typing import Any
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import yaml
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from packaging.version import Version
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import mlflow
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from mlflow import pyfunc
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from mlflow.models import Model, ModelInputExample, ModelSignature
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from mlflow.models.model import MLMODEL_FILE_NAME
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from mlflow.models.signature import _infer_signature_from_input_example
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from mlflow.models.utils import _save_example
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from mlflow.tracking._model_registry import DEFAULT_AWAIT_MAX_SLEEP_SECONDS
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from mlflow.tracking.artifact_utils import _download_artifact_from_uri
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from mlflow.utils.docstring_utils import LOG_MODEL_PARAM_DOCS, format_docstring
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from mlflow.utils.environment import (
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_CONDA_ENV_FILE_NAME,
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_CONSTRAINTS_FILE_NAME,
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_PYTHON_ENV_FILE_NAME,
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_REQUIREMENTS_FILE_NAME,
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_mlflow_conda_env,
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_process_conda_env,
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_process_pip_requirements,
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_PythonEnv,
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_validate_env_arguments,
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)
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from mlflow.utils.file_utils import get_total_file_size, write_to
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from mlflow.utils.model_utils import (
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_add_code_from_conf_to_system_path,
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_copy_extra_files,
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_get_flavor_configuration,
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_validate_and_copy_code_paths,
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_validate_and_prepare_target_save_path,
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)
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from mlflow.utils.requirements_utils import _get_pinned_requirement
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FLAVOR_NAME = "prophet"
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_MODEL_BINARY_KEY = "data"
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_MODEL_BINARY_FILE_NAME = "model.pr"
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_MODEL_TYPE_KEY = "model_type"
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_logger = logging.getLogger(__name__)
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def get_default_pip_requirements():
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"""
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Returns:
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A list of default pip requirements for MLflow Models produced by this flavor.
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Calls to :func:`save_model()` and :func:`log_model()` produce a pip environment
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that, at a minimum, contains these requirements.
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"""
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# Note: Prophet's whl build process will fail due to missing dependencies, defaulting
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# to setup.py installation process.
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# If a pystan installation error occurs, ensure gcc>=8 is installed in your environment.
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# See: https://gcc.gnu.org/install/
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import prophet
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pip_deps = [_get_pinned_requirement("prophet")]
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# cmdstanpy>=1.3.0 is not compatible with prophet<=1.2.0
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# https://github.com/facebook/prophet/issues/2697
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if Version(prophet.__version__) <= Version("1.2.0"):
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pip_deps.append("cmdstanpy<1.3.0")
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return pip_deps
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def get_default_conda_env():
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"""
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Returns:
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The default Conda environment for MLflow Models produced by calls to
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:func:`save_model()` and :func:`log_model()`.
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"""
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return _mlflow_conda_env(additional_pip_deps=get_default_pip_requirements())
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@format_docstring(LOG_MODEL_PARAM_DOCS.format(package_name=FLAVOR_NAME))
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def save_model(
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pr_model,
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path,
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conda_env=None,
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code_paths=None,
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mlflow_model=None,
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signature: ModelSignature = None,
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input_example: ModelInputExample = None,
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pip_requirements=None,
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extra_pip_requirements=None,
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metadata=None,
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extra_files=None,
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):
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"""
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Save a Prophet model to a path on the local file system.
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Args:
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pr_model: Prophet model (an instance of Prophet() forecaster that has been fit
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on a temporal series.
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path: Local path where the serialized model (as JSON) is to be saved.
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conda_env: {{ conda_env }}
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code_paths: {{ code_paths }}
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mlflow_model: :py:mod:`mlflow.models.Model` this flavor is being added to.
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signature: an instance of the :py:class:`ModelSignature <mlflow.models.ModelSignature>`
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class that describes the model's inputs and outputs. If not specified but an
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``input_example`` is supplied, a signature will be automatically inferred
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based on the supplied input example and model. To disable automatic signature
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inference when providing an input example, set ``signature`` to ``False``.
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To manually infer a model signature, call
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:py:func:`infer_signature() <mlflow.models.infer_signature>` on datasets
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with valid model inputs, such as a training dataset with the target column
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omitted, and valid model outputs, like model predictions made on the training
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dataset, for example:
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.. code-block:: python
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from mlflow.models import infer_signature
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model = Prophet().fit(df)
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train = model.history
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predictions = model.predict(model.make_future_dataframe(30))
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signature = infer_signature(train, predictions)
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input_example: {{ input_example }}
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pip_requirements: {{ pip_requirements }}
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extra_pip_requirements: {{ extra_pip_requirements }}
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metadata: {{ metadata }}
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extra_files: {{ extra_files }}
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"""
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import prophet
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_validate_env_arguments(conda_env, pip_requirements, extra_pip_requirements)
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path = os.path.abspath(path)
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_validate_and_prepare_target_save_path(path)
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code_dir_subpath = _validate_and_copy_code_paths(code_paths, path)
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if mlflow_model is None:
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mlflow_model = Model()
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saved_example = _save_example(mlflow_model, input_example, path)
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if signature is None and saved_example is not None:
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wrapped_model = _ProphetModelWrapper(pr_model)
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signature = _infer_signature_from_input_example(saved_example, wrapped_model)
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elif signature is False:
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signature = None
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if signature is not None:
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mlflow_model.signature = signature
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if metadata is not None:
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mlflow_model.metadata = metadata
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model_data_path = os.path.join(path, _MODEL_BINARY_FILE_NAME)
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_save_model(pr_model, model_data_path)
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model_bin_kwargs = {_MODEL_BINARY_KEY: _MODEL_BINARY_FILE_NAME}
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pyfunc.add_to_model(
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mlflow_model,
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loader_module="mlflow.prophet",
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conda_env=_CONDA_ENV_FILE_NAME,
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python_env=_PYTHON_ENV_FILE_NAME,
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code=code_dir_subpath,
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**model_bin_kwargs,
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)
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extra_files_config = _copy_extra_files(extra_files, path)
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flavor_conf = {
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_MODEL_TYPE_KEY: pr_model.__class__.__name__,
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**model_bin_kwargs,
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**extra_files_config,
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}
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mlflow_model.add_flavor(
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FLAVOR_NAME,
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prophet_version=prophet.__version__,
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code=code_dir_subpath,
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**flavor_conf,
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)
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if size := get_total_file_size(path):
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mlflow_model.model_size_bytes = size
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mlflow_model.save(os.path.join(path, MLMODEL_FILE_NAME))
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if conda_env is None:
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default_reqs = None
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if pip_requirements is None:
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# cannot use inferred requirements due to prophet's build process
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# as the package installation of pystan requires Cython to be present
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# in the path. Prophet's installation itself requires imports of
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# existing libraries, preventing the execution of a batched pip install
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# and instead using a a strictly defined list of dependencies.
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# NOTE: if Prophet .whl build architecture is changed, this should be
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# modified to a standard inferred approach.
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default_reqs = get_default_pip_requirements()
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conda_env, pip_requirements, pip_constraints = _process_pip_requirements(
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default_reqs,
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pip_requirements,
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extra_pip_requirements,
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)
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else:
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conda_env, pip_requirements, pip_constraints = _process_conda_env(conda_env)
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with open(os.path.join(path, _CONDA_ENV_FILE_NAME), "w") as f:
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yaml.safe_dump(conda_env, stream=f, default_flow_style=False)
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if pip_constraints:
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write_to(os.path.join(path, _CONSTRAINTS_FILE_NAME), "\n".join(pip_constraints))
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write_to(os.path.join(path, _REQUIREMENTS_FILE_NAME), "\n".join(pip_requirements))
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_PythonEnv.current().to_yaml(os.path.join(path, _PYTHON_ENV_FILE_NAME))
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@format_docstring(LOG_MODEL_PARAM_DOCS.format(package_name=FLAVOR_NAME))
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def log_model(
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pr_model,
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artifact_path: str | None = None,
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conda_env=None,
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code_paths=None,
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registered_model_name=None,
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signature: ModelSignature = None,
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input_example: ModelInputExample = None,
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await_registration_for=DEFAULT_AWAIT_MAX_SLEEP_SECONDS,
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pip_requirements=None,
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extra_pip_requirements=None,
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metadata=None,
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extra_files=None,
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name: str | None = None,
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params: dict[str, Any] | None = None,
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tags: dict[str, Any] | None = None,
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model_type: str | None = None,
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step: int = 0,
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model_id: str | None = None,
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**kwargs,
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):
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"""
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Logs a Prophet model as an MLflow artifact for the current run.
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Args:
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pr_model: Prophet model to be saved.
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artifact_path: Deprecated. Use `name` instead.
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conda_env: {{ conda_env }}
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code_paths: {{ code_paths }}
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registered_model_name: If given, create a model
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version under ``registered_model_name``, also creating a
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registered model if one with the given name does not exist.
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signature: An instance of the :py:class:`ModelSignature <mlflow.models.ModelSignature>`
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class that describes the model's inputs and outputs. If not specified but an
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``input_example`` is supplied, a signature will be automatically inferred
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based on the supplied input example and model. To disable automatic signature
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inference when providing an input example, set ``signature`` to ``False``.
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To manually infer a model signature, call
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:py:func:`infer_signature() <mlflow.models.infer_signature>` on datasets
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with valid model inputs, such as a training dataset with the target column
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omitted, and valid model outputs, like model predictions made on the training
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dataset, for example:
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.. code-block:: python
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from mlflow.models import infer_signature
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model = Prophet().fit(df)
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train = model.history
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predictions = model.predict(model.make_future_dataframe(30))
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signature = infer_signature(train, predictions)
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input_example: {{ input_example }}
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await_registration_for: Number of seconds to wait for the model version
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to finish being created and is in ``READY`` status.
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By default, the function waits for five minutes.
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Specify 0 or None to skip waiting.
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pip_requirements: {{ pip_requirements }}
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extra_pip_requirements: {{ extra_pip_requirements }}
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metadata: {{ metadata }}
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extra_files: {{ extra_files }}
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name: {{ name }}
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params: {{ params }}
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tags: {{ tags }}
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model_type: {{ model_type }}
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step: {{ step }}
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model_id: {{ model_id }}
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kwargs: Extra arguments to pass to :py:func:`mlflow.models.Model.log`.
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Returns:
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A :py:class:`ModelInfo <mlflow.models.model.ModelInfo>` instance that contains the
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metadata of the logged model.
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"""
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return Model.log(
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artifact_path=artifact_path,
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name=name,
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flavor=mlflow.prophet,
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registered_model_name=registered_model_name,
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pr_model=pr_model,
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conda_env=conda_env,
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code_paths=code_paths,
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signature=signature,
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input_example=input_example,
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await_registration_for=await_registration_for,
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pip_requirements=pip_requirements,
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extra_pip_requirements=extra_pip_requirements,
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metadata=metadata,
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extra_files=extra_files,
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params=params,
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tags=tags,
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model_type=model_type,
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step=step,
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model_id=model_id,
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**kwargs,
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)
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def _save_model(model, path):
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from prophet.serialize import model_to_json
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model_ser = model_to_json(model)
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with open(path, "w") as f:
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json.dump(model_ser, f)
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def _load_model(path):
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from prophet.serialize import model_from_json
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with open(path) as f:
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model = json.load(f)
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return model_from_json(model)
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def _load_pyfunc(path):
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"""
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Loads PyFunc implementation for Prophet. Called by ``pyfunc.load_model``.
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Args:
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path: Local filesystem path to the MLflow Model with the ``prophet`` flavor.
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"""
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return _ProphetModelWrapper(_load_model(path))
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def load_model(model_uri, dst_path=None):
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"""
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Load a Prophet model from a local file or a run.
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Args:
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model_uri: The location, in URI format, of the MLflow model. For example:
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- ``/Users/me/path/to/local/model``
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- ``relative/path/to/local/model``
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- ``s3://my_bucket/path/to/model``
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- ``runs:/<mlflow_run_id>/run-relative/path/to/model``
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For more information about supported URI schemes, see
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`Referencing Artifacts <https://www.mlflow.org/docs/latest/tracking.html#
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artifact-locations>`_.
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dst_path: The local filesystem path to which to download the model artifact.
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This directory must already exist. If unspecified, a local output
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path will be created.
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Returns:
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A Prophet model instance
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"""
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local_model_path = _download_artifact_from_uri(artifact_uri=model_uri, output_path=dst_path)
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flavor_conf = _get_flavor_configuration(model_path=local_model_path, flavor_name=FLAVOR_NAME)
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_add_code_from_conf_to_system_path(local_model_path, flavor_conf)
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pr_model_path = os.path.join(
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local_model_path, flavor_conf.get(_MODEL_BINARY_KEY, _MODEL_BINARY_FILE_NAME)
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)
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return _load_model(pr_model_path)
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class _ProphetModelWrapper:
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def __init__(self, pr_model):
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self.pr_model = pr_model
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def get_raw_model(self):
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"""
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Returns the underlying model.
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"""
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return self.pr_model
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def predict(self, dataframe, params: dict[str, Any] | None = None):
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"""
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Args:
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dataframe: Model input data.
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params: Additional parameters to pass to the model for inference.
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Returns:
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Model predictions.
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"""
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return self.pr_model.predict(dataframe)
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