366 lines
13 KiB
Python
366 lines
13 KiB
Python
"""Functions for saving Keras models to MLflow."""
|
|
|
|
import importlib
|
|
import logging
|
|
import os
|
|
import shutil
|
|
import tempfile
|
|
from typing import Any
|
|
|
|
import keras
|
|
import yaml
|
|
|
|
import mlflow
|
|
from mlflow import pyfunc
|
|
from mlflow.exceptions import INVALID_PARAMETER_VALUE, MlflowException
|
|
from mlflow.models import (
|
|
Model,
|
|
ModelInputExample,
|
|
ModelSignature,
|
|
infer_pip_requirements,
|
|
)
|
|
from mlflow.models.model import MLMODEL_FILE_NAME
|
|
from mlflow.models.utils import _save_example
|
|
from mlflow.tracking._model_registry import DEFAULT_AWAIT_MAX_SLEEP_SECONDS
|
|
from mlflow.types.schema import TensorSpec
|
|
from mlflow.utils.docstring_utils import LOG_MODEL_PARAM_DOCS, format_docstring
|
|
from mlflow.utils.environment import (
|
|
_CONDA_ENV_FILE_NAME,
|
|
_CONSTRAINTS_FILE_NAME,
|
|
_PYTHON_ENV_FILE_NAME,
|
|
_REQUIREMENTS_FILE_NAME,
|
|
_mlflow_conda_env,
|
|
_process_conda_env,
|
|
_process_pip_requirements,
|
|
_PythonEnv,
|
|
)
|
|
from mlflow.utils.file_utils import get_total_file_size, write_to
|
|
from mlflow.utils.requirements_utils import _get_pinned_requirement
|
|
|
|
FLAVOR_NAME = "keras"
|
|
|
|
_MODEL_SAVE_PATH = "model"
|
|
_KERAS_MODULE_SPEC_PATH = "keras_module.txt"
|
|
|
|
_logger = logging.getLogger(__name__)
|
|
|
|
|
|
_MODEL_DATA_PATH = "data"
|
|
|
|
|
|
def get_default_pip_requirements():
|
|
"""
|
|
Returns:
|
|
A list of default pip requirements for MLflow Models produced by Keras flavor. Calls to
|
|
`save_model()` and `log_model()` produce a pip environment that, at minimum, contains these
|
|
requirements.
|
|
"""
|
|
return [_get_pinned_requirement("keras")]
|
|
|
|
|
|
def get_default_conda_env():
|
|
"""
|
|
Returns:
|
|
The default Conda environment for MLflow Models produced by calls to `save_model()` and
|
|
`log_model()`.
|
|
"""
|
|
return _mlflow_conda_env(additional_pip_deps=get_default_pip_requirements())
|
|
|
|
|
|
def _export_keras_model(model, path, signature):
|
|
if signature is None:
|
|
raise ValueError(
|
|
"`signature` cannot be None when `save_exported_model=True` for "
|
|
"`mlflow.keras.save_model()` method."
|
|
)
|
|
try:
|
|
import tensorflow as tf
|
|
except ImportError:
|
|
raise MlflowException(
|
|
"`tensorflow` must be installed if you want to export a Keras 3 model, please "
|
|
"install `tensorflow` by `pip install tensorflow`, or set `save_exported_model=False`."
|
|
)
|
|
input_schema = signature.inputs.to_dict()
|
|
export_signature = []
|
|
for schema in input_schema:
|
|
dtype = schema["tensor-spec"]["dtype"]
|
|
shape = schema["tensor-spec"]["shape"]
|
|
# Replace -1 with None in shape.
|
|
new_shape = [size if size != -1 else None for size in shape]
|
|
export_signature.append(tf.TensorSpec(shape=new_shape, dtype=dtype))
|
|
|
|
export_archive = keras.export.ExportArchive()
|
|
export_archive.track(model)
|
|
export_archive.add_endpoint(
|
|
name="serve",
|
|
fn=model.call,
|
|
input_signature=export_signature,
|
|
)
|
|
export_archive.write_out(path)
|
|
|
|
|
|
@format_docstring(LOG_MODEL_PARAM_DOCS.format(package_name=FLAVOR_NAME))
|
|
def save_model(
|
|
model,
|
|
path,
|
|
save_exported_model=False,
|
|
conda_env=None,
|
|
mlflow_model=None,
|
|
signature: ModelSignature = None,
|
|
input_example: ModelInputExample = None,
|
|
pip_requirements=None,
|
|
extra_pip_requirements=None,
|
|
save_model_kwargs=None,
|
|
metadata=None,
|
|
):
|
|
"""
|
|
Save a Keras model along with metadata.
|
|
|
|
This method saves a Keras model along with metadata such as model signature and conda
|
|
environments to local file system. This method is called inside `mlflow.keras.log_model()`.
|
|
|
|
Args:
|
|
model: an instance of `keras.Model`. The Keras model to be saved.
|
|
path: local path where the MLflow model is to be saved.
|
|
save_exported_model: If True, save Keras model in exported model
|
|
format, otherwise save in `.keras` format. For more information, please
|
|
refer to https://keras.io/guides/serialization_and_saving/.
|
|
conda_env: {{ conda_env }}
|
|
mlflow_model: an instance of `mlflow.models.Model`, defaults to None. MLflow model
|
|
configuration to which to add the Keras model metadata. If None, a blank instance will
|
|
be created.
|
|
signature: {{ signature }}
|
|
input_example: {{ input_example }}
|
|
pip_requirements: {{ pip_requirements }}
|
|
extra_pip_requirements: {{ extra_pip_requirements }}
|
|
save_model_kwargs: A dict of kwargs to pass to `keras.Model.save`
|
|
method.
|
|
metadata: {{ metadata }}
|
|
|
|
.. code-block:: python
|
|
:caption: Example
|
|
|
|
import keras
|
|
import mlflow
|
|
|
|
model = keras.Sequential([
|
|
keras.Input([28, 28, 3]),
|
|
keras.layers.Flatten(),
|
|
keras.layers.Dense(2),
|
|
])
|
|
with mlflow.start_run() as run:
|
|
mlflow.keras.save_model(model, "./model")
|
|
"""
|
|
|
|
import keras
|
|
|
|
if signature is None:
|
|
_logger.warning("You are saving a Keras model without specifying model signature.")
|
|
else:
|
|
num_inputs = len(signature.inputs.inputs)
|
|
if num_inputs == 0:
|
|
raise MlflowException(
|
|
"The model signature's input schema must contain at least one field.",
|
|
error_code=INVALID_PARAMETER_VALUE,
|
|
)
|
|
for field in signature.inputs.inputs:
|
|
if not isinstance(field, TensorSpec):
|
|
raise MlflowException(
|
|
"All fields in the model signature's input schema must be of type TensorSpec.",
|
|
error_code=INVALID_PARAMETER_VALUE,
|
|
)
|
|
if field.shape[0] != -1:
|
|
raise MlflowException(
|
|
"All input schema' first dimension should be -1, which represents the dynamic "
|
|
"batch dimension.",
|
|
error_code=INVALID_PARAMETER_VALUE,
|
|
)
|
|
|
|
if mlflow_model is None:
|
|
mlflow_model = Model()
|
|
if signature is not None:
|
|
mlflow_model.signature = signature
|
|
if input_example is not None:
|
|
_save_example(mlflow_model, input_example, path)
|
|
if metadata is not None:
|
|
mlflow_model.metadata = metadata
|
|
|
|
save_model_kwargs = save_model_kwargs or {}
|
|
|
|
data_subpath = _MODEL_DATA_PATH
|
|
# Construct new data folder in existing path.
|
|
data_path = os.path.join(path, data_subpath)
|
|
os.makedirs(data_path)
|
|
|
|
model_subpath = os.path.join(data_subpath, _MODEL_SAVE_PATH)
|
|
keras_module = importlib.import_module("keras")
|
|
|
|
# Save keras module spec to path/data/keras_module.txt
|
|
with open(os.path.join(data_path, _KERAS_MODULE_SPEC_PATH), "w") as f:
|
|
f.write(keras_module.__name__)
|
|
|
|
if save_exported_model:
|
|
model_path = os.path.join(path, model_subpath)
|
|
_export_keras_model(model, model_path, signature)
|
|
else:
|
|
# Save path requires ".keras" suffix.
|
|
file_extension = ".keras"
|
|
model_path = os.path.join(path, model_subpath) + file_extension
|
|
if path.startswith("/dbfs/"):
|
|
# The Databricks Filesystem uses a FUSE implementation that does not support
|
|
# random writes. It causes an error.
|
|
with tempfile.NamedTemporaryFile(suffix=".keras") as f:
|
|
model.save(f.name, **save_model_kwargs)
|
|
f.flush() # force flush the data
|
|
shutil.copy2(src=f.name, dst=model_path)
|
|
else:
|
|
model.save(model_path, **save_model_kwargs)
|
|
|
|
flavor_options = {
|
|
"data": data_subpath,
|
|
"keras_version": keras.__version__,
|
|
"keras_backend": keras.backend.backend(),
|
|
"save_exported_model": save_exported_model,
|
|
}
|
|
|
|
# Add flavor info to `mlflow_model`.
|
|
mlflow_model.add_flavor(FLAVOR_NAME, **flavor_options)
|
|
|
|
# Add loader_module, data and env data to `mlflow_model`.
|
|
pyfunc.add_to_model(
|
|
mlflow_model,
|
|
loader_module="mlflow.keras",
|
|
conda_env=_CONDA_ENV_FILE_NAME,
|
|
python_env=_PYTHON_ENV_FILE_NAME,
|
|
)
|
|
|
|
# Add model file size to `mlflow_model`.
|
|
if size := get_total_file_size(path):
|
|
mlflow_model.model_size_bytes = size
|
|
|
|
# save mlflow_model to path/MLmodel
|
|
mlflow_model.save(os.path.join(path, MLMODEL_FILE_NAME))
|
|
|
|
if conda_env is None:
|
|
if pip_requirements is None:
|
|
default_reqs = get_default_pip_requirements()
|
|
# To ensure `_load_pyfunc` can successfully load the model during the dependency
|
|
# inference, `mlflow_model.save` must be called beforehand to save an MLmodel file.
|
|
inferred_reqs = infer_pip_requirements(path, FLAVOR_NAME, fallback=default_reqs)
|
|
default_reqs = sorted(set(inferred_reqs).union(default_reqs))
|
|
else:
|
|
default_reqs = None
|
|
conda_env, pip_requirements, pip_constraints = _process_pip_requirements(
|
|
default_reqs,
|
|
pip_requirements,
|
|
extra_pip_requirements,
|
|
)
|
|
else:
|
|
conda_env, pip_requirements, pip_constraints = _process_conda_env(conda_env)
|
|
|
|
with open(os.path.join(path, _CONDA_ENV_FILE_NAME), "w") as f:
|
|
yaml.safe_dump(conda_env, stream=f, default_flow_style=False)
|
|
|
|
# Save `constraints.txt` if necessary.
|
|
if pip_constraints:
|
|
write_to(os.path.join(path, _CONSTRAINTS_FILE_NAME), "\n".join(pip_constraints))
|
|
|
|
# Save `requirements.txt`.
|
|
write_to(os.path.join(path, _REQUIREMENTS_FILE_NAME), "\n".join(pip_requirements))
|
|
|
|
_PythonEnv.current().to_yaml(os.path.join(path, _PYTHON_ENV_FILE_NAME))
|
|
|
|
|
|
@format_docstring(LOG_MODEL_PARAM_DOCS.format(package_name=FLAVOR_NAME))
|
|
def log_model(
|
|
model,
|
|
artifact_path: str | None = None,
|
|
save_exported_model=False,
|
|
conda_env=None,
|
|
signature: ModelSignature = None,
|
|
input_example: ModelInputExample = None,
|
|
registered_model_name=None,
|
|
await_registration_for=DEFAULT_AWAIT_MAX_SLEEP_SECONDS,
|
|
pip_requirements=None,
|
|
extra_pip_requirements=None,
|
|
save_model_kwargs=None,
|
|
metadata=None,
|
|
name: str | None = None,
|
|
params: dict[str, Any] | None = None,
|
|
tags: dict[str, Any] | None = None,
|
|
model_type: str | None = None,
|
|
step: int = 0,
|
|
model_id: str | None = None,
|
|
):
|
|
"""
|
|
Log a Keras model along with metadata to MLflow.
|
|
|
|
This method saves a Keras model along with metadata such as model signature and conda
|
|
environments to MLflow.
|
|
|
|
Args:
|
|
model: an instance of `keras.Model`. The Keras model to be saved.
|
|
artifact_path: Deprecated. Use `name` instead.
|
|
save_exported_model: defaults to False. If True, save Keras model in exported
|
|
model format, otherwise save in `.keras` format. For more information, please
|
|
refer to `Keras doc <https://keras.io/guides/serialization_and_saving/>`_.
|
|
conda_env: {{ conda_env }}
|
|
signature: {{ signature }}
|
|
input_example: {{ input_example }}
|
|
registered_model_name: defaults to None. If set, create a model version under
|
|
`registered_model_name`, also create a registered model if one with the given name does
|
|
not exist.
|
|
await_registration_for: defaults to
|
|
`mlflow.tracking._model_registry.DEFAULT_AWAIT_MAX_SLEEP_SECONDS`. Number of
|
|
seconds to wait for the model version to finish being created and is in ``READY``
|
|
status. By default, the function waits for five minutes. Specify 0 or None to skip
|
|
waiting.
|
|
pip_requirements: {{ pip_requirements }}
|
|
extra_pip_requirements: {{ extra_pip_requirements }}
|
|
save_model_kwargs: defaults to None. A dict of kwargs to pass to
|
|
`keras.Model.save` method.
|
|
metadata: Custom metadata dictionary passed to the model and stored in the MLmodel
|
|
file.
|
|
name: {{ name }}
|
|
params: {{ params }}
|
|
tags: {{ tags }}
|
|
model_type: {{ model_type }}
|
|
step: {{ step }}
|
|
model_id: {{ model_id }}
|
|
|
|
.. code-block:: python
|
|
:caption: Example
|
|
|
|
import keras
|
|
import mlflow
|
|
|
|
model = keras.Sequential([
|
|
keras.Input([28, 28, 3]),
|
|
keras.layers.Flatten(),
|
|
keras.layers.Dense(2),
|
|
])
|
|
with mlflow.start_run() as run:
|
|
mlflow.keras.log_model(model, name="model")
|
|
"""
|
|
return Model.log(
|
|
artifact_path=artifact_path,
|
|
name=name,
|
|
flavor=mlflow.keras,
|
|
model=model,
|
|
conda_env=conda_env,
|
|
registered_model_name=registered_model_name,
|
|
signature=signature,
|
|
input_example=input_example,
|
|
await_registration_for=await_registration_for,
|
|
pip_requirements=pip_requirements,
|
|
extra_pip_requirements=extra_pip_requirements,
|
|
save_model_kwargs=save_model_kwargs,
|
|
save_exported_model=save_exported_model,
|
|
metadata=metadata,
|
|
params=params,
|
|
tags=tags,
|
|
model_type=model_type,
|
|
step=step,
|
|
model_id=model_id,
|
|
)
|