378 lines
12 KiB
Python
378 lines
12 KiB
Python
"""
|
|
The ``mlflow.h2o`` module provides an API for logging and loading H2O models. This module exports
|
|
H2O models with the following flavors:
|
|
|
|
H20 (native) format
|
|
This is the main flavor that can be loaded back into H2O.
|
|
:py:mod:`mlflow.pyfunc`
|
|
Produced for use by generic pyfunc-based deployment tools and batch inference.
|
|
"""
|
|
|
|
import logging
|
|
import os
|
|
import warnings
|
|
from typing import Any
|
|
|
|
import yaml
|
|
|
|
import mlflow
|
|
from mlflow import pyfunc
|
|
from mlflow.models import Model, ModelInputExample, ModelSignature
|
|
from mlflow.models.model import MLMODEL_FILE_NAME
|
|
from mlflow.models.signature import _infer_signature_from_input_example
|
|
from mlflow.models.utils import _save_example
|
|
from mlflow.tracking.artifact_utils import _download_artifact_from_uri
|
|
from mlflow.utils.docstring_utils import LOG_MODEL_PARAM_DOCS, format_docstring
|
|
from mlflow.utils.environment import (
|
|
_CONDA_ENV_FILE_NAME,
|
|
_CONSTRAINTS_FILE_NAME,
|
|
_PYTHON_ENV_FILE_NAME,
|
|
_REQUIREMENTS_FILE_NAME,
|
|
_mlflow_conda_env,
|
|
_process_conda_env,
|
|
_process_pip_requirements,
|
|
_PythonEnv,
|
|
_validate_env_arguments,
|
|
)
|
|
from mlflow.utils.file_utils import (
|
|
get_total_file_size,
|
|
write_to,
|
|
)
|
|
from mlflow.utils.model_utils import (
|
|
_add_code_from_conf_to_system_path,
|
|
_copy_extra_files,
|
|
_get_flavor_configuration,
|
|
_validate_and_copy_code_paths,
|
|
_validate_and_prepare_target_save_path,
|
|
)
|
|
from mlflow.utils.requirements_utils import _get_pinned_requirement
|
|
|
|
FLAVOR_NAME = "h2o"
|
|
|
|
_MODEL_DATA_SUBPATH = "model.h2o"
|
|
|
|
_logger = logging.getLogger(__name__)
|
|
|
|
|
|
def get_default_pip_requirements():
|
|
"""
|
|
Returns:
|
|
A list of default pip requirements for MLflow Models produced by this flavor.
|
|
Calls to :func:`save_model()` and :func:`log_model()` produce a pip environment
|
|
that, at minimum, contains these requirements.
|
|
"""
|
|
return [_get_pinned_requirement("h2o")]
|
|
|
|
|
|
def get_default_conda_env():
|
|
"""
|
|
Returns:
|
|
The default Conda environment for MLflow Models produced by calls to
|
|
:func:`save_model()` and :func:`log_model()`.
|
|
"""
|
|
return _mlflow_conda_env(additional_pip_deps=get_default_pip_requirements())
|
|
|
|
|
|
@format_docstring(LOG_MODEL_PARAM_DOCS.format(package_name=FLAVOR_NAME))
|
|
def save_model(
|
|
h2o_model,
|
|
path,
|
|
conda_env=None,
|
|
code_paths=None,
|
|
mlflow_model=None,
|
|
settings=None,
|
|
signature: ModelSignature = None,
|
|
input_example: ModelInputExample = None,
|
|
pip_requirements=None,
|
|
extra_pip_requirements=None,
|
|
metadata=None,
|
|
extra_files=None,
|
|
**kwargs,
|
|
):
|
|
"""Save an H2O model to a path on the local file system.
|
|
|
|
Args:
|
|
h2o_model: H2O model to be saved.
|
|
path: Local path where the model is to be saved.
|
|
conda_env: {{ conda_env }}
|
|
code_paths: {{ code_paths }}
|
|
mlflow_model: :py:mod:`mlflow.models.Model` this flavor is being added to.
|
|
settings: Settings to pass to ``h2o.init()`` when loading the model.
|
|
signature: {{ signature }}
|
|
input_example: {{ input_example }}
|
|
pip_requirements: {{ pip_requirements }}
|
|
extra_pip_requirements: {{ extra_pip_requirements }}
|
|
metadata: {{ metadata }}
|
|
extra_files: {{ extra_files }}
|
|
kwargs: {{ kwargs }}
|
|
"""
|
|
import h2o
|
|
|
|
_validate_env_arguments(conda_env, pip_requirements, extra_pip_requirements)
|
|
|
|
path = os.path.abspath(path)
|
|
_validate_and_prepare_target_save_path(path)
|
|
model_data_subpath = _MODEL_DATA_SUBPATH
|
|
model_data_path = os.path.join(path, model_data_subpath)
|
|
os.makedirs(model_data_path)
|
|
code_dir_subpath = _validate_and_copy_code_paths(code_paths, path)
|
|
|
|
if mlflow_model is None:
|
|
mlflow_model = Model()
|
|
saved_example = _save_example(mlflow_model, input_example, path)
|
|
|
|
if signature is None and saved_example is not None:
|
|
wrapped_model = _H2OModelWrapper(h2o_model)
|
|
signature = _infer_signature_from_input_example(saved_example, wrapped_model)
|
|
elif signature is False:
|
|
signature = None
|
|
|
|
if signature is not None:
|
|
mlflow_model.signature = signature
|
|
if metadata is not None:
|
|
mlflow_model.metadata = metadata
|
|
|
|
# Save h2o-model
|
|
if hasattr(h2o, "download_model"):
|
|
h2o_save_location = h2o.download_model(model=h2o_model, path=model_data_path)
|
|
else:
|
|
warnings.warn(
|
|
"If your cluster is remote, H2O may not store the model correctly. "
|
|
"Please upgrade H2O version to a newer version"
|
|
)
|
|
h2o_save_location = h2o.save_model(
|
|
model=h2o_model, path=model_data_path, force=True, **kwargs
|
|
)
|
|
model_file = os.path.basename(h2o_save_location)
|
|
|
|
# Save h2o-settings
|
|
if settings is None:
|
|
settings = {}
|
|
settings["full_file"] = h2o_save_location
|
|
settings["model_file"] = model_file
|
|
settings["model_dir"] = model_data_path
|
|
with open(os.path.join(model_data_path, "h2o.yaml"), "w") as settings_file:
|
|
yaml.safe_dump(settings, stream=settings_file)
|
|
|
|
extra_files_config = _copy_extra_files(extra_files, path)
|
|
|
|
pyfunc.add_to_model(
|
|
mlflow_model,
|
|
loader_module="mlflow.h2o",
|
|
data=model_data_subpath,
|
|
conda_env=_CONDA_ENV_FILE_NAME,
|
|
python_env=_PYTHON_ENV_FILE_NAME,
|
|
code=code_dir_subpath,
|
|
)
|
|
mlflow_model.add_flavor(
|
|
FLAVOR_NAME,
|
|
h2o_version=h2o.__version__,
|
|
data=model_data_subpath,
|
|
code=code_dir_subpath,
|
|
**extra_files_config,
|
|
)
|
|
if size := get_total_file_size(path):
|
|
mlflow_model.model_size_bytes = size
|
|
mlflow_model.save(os.path.join(path, MLMODEL_FILE_NAME))
|
|
|
|
if conda_env is None:
|
|
if pip_requirements is None:
|
|
default_reqs = get_default_pip_requirements()
|
|
# To ensure `_load_pyfunc` can successfully load the model during the dependency
|
|
# inference, `mlflow_model.save` must be called beforehand to save an MLmodel file.
|
|
inferred_reqs = mlflow.models.infer_pip_requirements(
|
|
path,
|
|
FLAVOR_NAME,
|
|
fallback=default_reqs,
|
|
)
|
|
default_reqs = sorted(set(inferred_reqs).union(default_reqs))
|
|
else:
|
|
default_reqs = None
|
|
conda_env, pip_requirements, pip_constraints = _process_pip_requirements(
|
|
default_reqs,
|
|
pip_requirements,
|
|
extra_pip_requirements,
|
|
)
|
|
else:
|
|
conda_env, pip_requirements, pip_constraints = _process_conda_env(conda_env)
|
|
|
|
with open(os.path.join(path, _CONDA_ENV_FILE_NAME), "w") as f:
|
|
yaml.safe_dump(conda_env, stream=f, default_flow_style=False)
|
|
|
|
# Save `constraints.txt` if necessary
|
|
if pip_constraints:
|
|
write_to(os.path.join(path, _CONSTRAINTS_FILE_NAME), "\n".join(pip_constraints))
|
|
|
|
# Save `requirements.txt`
|
|
write_to(os.path.join(path, _REQUIREMENTS_FILE_NAME), "\n".join(pip_requirements))
|
|
|
|
_PythonEnv.current().to_yaml(os.path.join(path, _PYTHON_ENV_FILE_NAME))
|
|
|
|
|
|
@format_docstring(LOG_MODEL_PARAM_DOCS.format(package_name=FLAVOR_NAME))
|
|
def log_model(
|
|
h2o_model,
|
|
artifact_path: str | None = None,
|
|
conda_env=None,
|
|
code_paths=None,
|
|
registered_model_name=None,
|
|
signature: ModelSignature = None,
|
|
input_example: ModelInputExample = None,
|
|
pip_requirements=None,
|
|
extra_pip_requirements=None,
|
|
metadata=None,
|
|
extra_files=None,
|
|
name: str | None = None,
|
|
params: dict[str, Any] | None = None,
|
|
tags: dict[str, Any] | None = None,
|
|
model_type: str | None = None,
|
|
step: int = 0,
|
|
model_id: str | None = None,
|
|
**kwargs,
|
|
):
|
|
"""Log an H2O model as an MLflow artifact for the current run.
|
|
|
|
Args:
|
|
h2o_model: H2O model to be saved.
|
|
artifact_path: Deprecated. Use `name` instead.
|
|
conda_env: {{ conda_env }}
|
|
code_paths: {{ code_paths }}
|
|
registered_model_name: If given, create a model version under
|
|
``registered_model_name``, also creating a registered model if one
|
|
with the given name does not exist.
|
|
signature: {{ signature }}
|
|
input_example: {{ input_example }}
|
|
pip_requirements: {{ pip_requirements }}
|
|
extra_pip_requirements: {{ extra_pip_requirements }}
|
|
metadata: {{ metadata }}
|
|
extra_files: {{ extra_files }}
|
|
name: {{ name }}
|
|
params: {{ params }}
|
|
tags: {{ tags }}
|
|
model_type: {{ model_type }}
|
|
step: {{ step }}
|
|
model_id: {{ model_id }}
|
|
kwargs: kwargs to pass to ``h2o.save_model`` method.
|
|
|
|
Returns:
|
|
A :py:class:`ModelInfo <mlflow.models.model.ModelInfo>` instance that contains the
|
|
metadata of the logged model.
|
|
|
|
"""
|
|
return Model.log(
|
|
artifact_path=artifact_path,
|
|
name=name,
|
|
flavor=mlflow.h2o,
|
|
registered_model_name=registered_model_name,
|
|
h2o_model=h2o_model,
|
|
conda_env=conda_env,
|
|
code_paths=code_paths,
|
|
signature=signature,
|
|
input_example=input_example,
|
|
pip_requirements=pip_requirements,
|
|
extra_pip_requirements=extra_pip_requirements,
|
|
extra_files=extra_files,
|
|
metadata=metadata,
|
|
params=params,
|
|
tags=tags,
|
|
model_type=model_type,
|
|
step=step,
|
|
model_id=model_id,
|
|
**kwargs,
|
|
)
|
|
|
|
|
|
def _load_model(path, init=False):
|
|
import h2o
|
|
|
|
path = os.path.abspath(path)
|
|
with open(os.path.join(path, "h2o.yaml")) as f:
|
|
params = yaml.safe_load(f.read())
|
|
if init:
|
|
h2o.init(**(params["init"] if "init" in params else {}))
|
|
h2o.no_progress()
|
|
|
|
model_path = os.path.join(path, params["model_file"])
|
|
if hasattr(h2o, "upload_model"):
|
|
model = h2o.upload_model(model_path)
|
|
else:
|
|
warnings.warn(
|
|
"If your cluster is remote, H2O may not load the model correctly. "
|
|
"Please upgrade H2O version to a newer version"
|
|
)
|
|
model = h2o.load_model(model_path)
|
|
|
|
return model
|
|
|
|
|
|
class _H2OModelWrapper:
|
|
def __init__(self, h2o_model):
|
|
self.h2o_model = h2o_model
|
|
|
|
def get_raw_model(self):
|
|
"""
|
|
Returns the underlying model.
|
|
"""
|
|
return self.h2o_model
|
|
|
|
def predict(self, dataframe, params: dict[str, Any] | None = None):
|
|
"""
|
|
Args:
|
|
dataframe: Model input data.
|
|
params: Additional parameters to pass to the model for inference.
|
|
|
|
Returns:
|
|
Model predictions.
|
|
"""
|
|
import h2o
|
|
|
|
predicted = self.h2o_model.predict(h2o.H2OFrame(dataframe)).as_data_frame()
|
|
predicted.index = dataframe.index
|
|
return predicted
|
|
|
|
|
|
def _load_pyfunc(path):
|
|
"""Load PyFunc implementation. Called by ``pyfunc.load_model``.
|
|
|
|
Args:
|
|
path: Local filesystem path to the MLflow Model with the ``h2o`` flavor.
|
|
|
|
"""
|
|
return _H2OModelWrapper(_load_model(path, init=True))
|
|
|
|
|
|
def load_model(model_uri, dst_path=None):
|
|
"""Load an H2O model from a local file (if ``run_id`` is ``None``) or a run.
|
|
|
|
This function expects there is an H2O instance initialised with ``h2o.init``.
|
|
|
|
Args:
|
|
model_uri: The location, in URI format, of the MLflow model. For example:
|
|
|
|
- ``/Users/me/path/to/local/model``
|
|
- ``relative/path/to/local/model``
|
|
- ``s3://my_bucket/path/to/model``
|
|
- ``runs:/<mlflow_run_id>/run-relative/path/to/model``
|
|
- ``models:/<model_name>/<model_version>``
|
|
- ``models:/<model_name>/<stage>``
|
|
|
|
For more information about supported URI schemes, see
|
|
`Referencing Artifacts <https://www.mlflow.org/docs/latest/concepts.html#
|
|
artifact-locations>`_.
|
|
dst_path: The local filesystem path to which to download the model artifact.
|
|
This directory must already exist. If unspecified, a local output
|
|
path will be created.
|
|
|
|
Returns:
|
|
An `H2OEstimator model object
|
|
<http://docs.h2o.ai/h2o/latest-stable/h2o-py/docs/intro.html#models>`_.
|
|
|
|
"""
|
|
local_model_path = _download_artifact_from_uri(artifact_uri=model_uri, output_path=dst_path)
|
|
flavor_conf = _get_flavor_configuration(model_path=local_model_path, flavor_name=FLAVOR_NAME)
|
|
_add_code_from_conf_to_system_path(local_model_path, flavor_conf)
|
|
# Flavor configurations for models saved in MLflow version <= 0.8.0 may not contain a
|
|
# `data` key; in this case, we assume the model artifact path to be `model.h2o`
|
|
h2o_model_file_path = os.path.join(local_model_path, flavor_conf.get("data", "model.h2o"))
|
|
return _load_model(path=h2o_model_file_path)
|