chore: import upstream snapshot with attribution
This commit is contained in:
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name: iris-classification
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python_env: python_env.yaml
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entry_points:
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main:
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parameters:
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epochs: {type: int, default: 50}
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command: |
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python iris_classification.py \
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--epochs {epochs}
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## Iris classification example with MLflow
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This example demonstrates training a classification model on the Iris dataset, scripting the model with TorchScript, logging the
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scripted model to MLflow using
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[`mlflow.pytorch.log_model`](https://mlflow.org/docs/latest/python_api/mlflow.pytorch.html#mlflow.pytorch.log_model), and
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loading it back for inference using
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[`mlflow.pytorch.load_model`](https://mlflow.org/docs/latest/python_api/mlflow.pytorch.html#mlflow.pytorch.load_model)
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### Running the code
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To run the example via MLflow, navigate to the `mlflow/examples/pytorch/torchscript/IrisClassification` directory and run the command
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```
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mlflow run .
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```
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This will run `iris_classification.py` with the default set of parameters such as `--max_epochs=5`. You can see the default value in the `MLproject` file.
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In order to run the file with custom parameters, run the command
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```
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mlflow run . -P epochs=X
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```
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where `X` is your desired value for `epochs`.
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If you have the required modules for the file and would like to skip the creation of a conda environment, add the argument `--env-manager=local`.
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```
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mlflow run . --env-manager=local
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```
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Once the code is finished executing, you can view the run's metrics, parameters, and details by running the command
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```
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mlflow server
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```
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and navigating to [http://localhost:5000](http://localhost:5000).
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## Running against a custom tracking server
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To configure MLflow to log to a custom (non-default) tracking location, set the `MLFLOW_TRACKING_URI` environment variable, e.g. via `export MLFLOW_TRACKING_URI=http://localhost:5000/`. For more details, see [the docs](https://mlflow.org/docs/latest/tracking.html#where-runs-are-recorded)
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import argparse
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import torch
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import torch.nn.functional as F
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from sklearn.datasets import load_iris
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from sklearn.metrics import accuracy_score
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from sklearn.model_selection import train_test_split
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from torch import nn
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import mlflow.pytorch
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from mlflow.models import infer_signature
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class IrisClassifier(nn.Module):
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def __init__(self):
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super().__init__()
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self.fc1 = nn.Linear(4, 10)
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self.fc2 = nn.Linear(10, 10)
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self.fc3 = nn.Linear(10, 3)
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def forward(self, x):
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x = F.relu(self.fc1(x))
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x = F.relu(self.fc2(x))
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x = F.dropout(x, 0.2)
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x = self.fc3(x)
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return x
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device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
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def prepare_data():
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iris = load_iris()
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data = iris.data
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labels = iris.target
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target_names = iris.target_names
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X_train, X_test, y_train, y_test = train_test_split(
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data, labels, test_size=0.2, random_state=42, shuffle=True, stratify=labels
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)
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X_train = torch.FloatTensor(X_train).to(device)
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X_test = torch.FloatTensor(X_test).to(device)
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y_train = torch.LongTensor(y_train).to(device)
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y_test = torch.LongTensor(y_test).to(device)
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return X_train, X_test, y_train, y_test, target_names
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def train_model(model, epochs, X_train, y_train):
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criterion = nn.CrossEntropyLoss()
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optimizer = torch.optim.Adam(model.parameters(), lr=0.01)
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for epoch in range(epochs):
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out = model(X_train)
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loss = criterion(out, y_train).to(device)
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optimizer.zero_grad()
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loss.backward()
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optimizer.step()
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if epoch % 10 == 0:
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print("number of epoch", epoch, "loss", float(loss))
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return model
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def test_model(model, X_test, y_test):
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model.eval()
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with torch.no_grad():
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predict_out = model(X_test)
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_, predict_y = torch.max(predict_out, 1)
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print("\nprediction accuracy", float(accuracy_score(y_test.cpu(), predict_y.cpu())))
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return infer_signature(X_test.numpy(), predict_out.numpy())
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if __name__ == "__main__":
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parser = argparse.ArgumentParser(description="Iris Classification Torchscripted model")
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parser.add_argument(
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"--epochs", type=int, default=100, help="number of epochs to run (default: 100)"
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)
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args = parser.parse_args()
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model = IrisClassifier()
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model = model.to(device)
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X_train, X_test, y_train, y_test, target_names = prepare_data()
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scripted_model = torch.jit.script(model) # scripting the model
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scripted_model = train_model(scripted_model, args.epochs, X_train, y_train)
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signature = test_model(scripted_model, X_test, y_test)
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with mlflow.start_run() as run:
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mlflow.pytorch.log_model(
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scripted_model, name="model", signature=signature
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) # logging scripted model
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model_path = mlflow.get_artifact_uri("model")
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loaded_pytorch_model = mlflow.pytorch.load_model(model_path) # loading scripted model
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model.eval()
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with torch.no_grad():
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test_datapoint = torch.Tensor([4.4000, 3.0000, 1.3000, 0.2000]).to(device)
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prediction = loaded_pytorch_model(test_datapoint)
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actual = "setosa"
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predicted = target_names[torch.argmax(prediction)]
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print(f"\nPREDICTION RESULT: ACTUAL: {actual}, PREDICTED: {predicted}")
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build_dependencies:
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- pip
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dependencies:
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- scikit-learn
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- cloudpickle==1.6.0
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- boto3
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- torchvision>=0.9.1
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- torch>=1.9.0
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name: mnist-torchscript
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python_env: python_env.yaml
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entry_points:
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main:
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parameters:
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epochs: {type: int, default: 5}
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batch_size: {type: int, default: 64}
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learning_rate: {type: float, default: 1e-3}
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command: |
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python mnist_torchscript.py \
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--epochs {epochs} \
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--batch-size {batch_size} \
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--lr {learning_rate}
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## MNIST example with MLflow
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This example demonstrates training of MNIST handwritten recognition model and logging it as torch scripted model.
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`mlflow.pytorch.log_model()` is used to log the scripted model to MLflow and `mlflow.pytorch.load_model()` to load it from MLflow
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### Code related to MLflow:
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This will log the TorchScripted model into MLflow and load the logged model.
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## Setting Tracking URI
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MLflow tracking URI can be set using the environment variable `MLFLOW_TRACKING_URI`
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Example: `export MLFLOW_TRACKING_URI=http://localhost:5000/`
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For more details - https://mlflow.org/docs/latest/tracking.html#where-runs-are-recorded
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### Running the code
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To run the example via MLflow, navigate to the `mlflow/examples/pytorch/torchscript/MNIST` directory and run the command
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```
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mlflow run .
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```
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This will run `mnist_torchscript.py` with the default set of parameters such as `--max_epochs=5`. You can see the default value in the `MLproject` file.
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In order to run the file with custom parameters, run the command
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```
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mlflow run . -P epochs=X
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```
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where `X` is your desired value for `epochs`.
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If you have the required modules for the file and would like to skip the creation of a conda environment, add the argument `--env-manager=local`.
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```
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mlflow run . --env-manager=local
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```
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Once the code is finished executing, you can view the run's metrics, parameters, and details by running the command
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```
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mlflow server
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```
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and navigating to [http://localhost:5000](http://localhost:5000).
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For more information on MLflow tracking, click [here](https://www.mlflow.org/docs/latest/tracking.html#mlflow-tracking) to view documentation.
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import argparse
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import torch
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import torch.nn.functional as F
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from torch import nn, optim
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from torch.optim.lr_scheduler import StepLR
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from torchvision import datasets, transforms
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import mlflow
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import mlflow.pytorch
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class Net(nn.Module):
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def __init__(self):
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super().__init__()
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self.conv1 = nn.Conv2d(1, 32, 3, 1)
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self.conv2 = nn.Conv2d(32, 64, 3, 1)
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self.dropout1 = nn.Dropout(0.25)
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self.dropout2 = nn.Dropout(0.5)
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self.fc1 = nn.Linear(9216, 128)
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self.fc2 = nn.Linear(128, 10)
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def forward(self, x):
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x = self.conv1(x)
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x = F.relu(x)
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x = self.conv2(x)
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x = F.relu(x)
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x = F.max_pool2d(x, 2)
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x = self.dropout1(x)
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x = torch.flatten(x, 1)
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x = self.fc1(x)
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x = F.relu(x)
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x = self.dropout2(x)
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x = self.fc2(x)
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x = F.log_softmax(x, dim=1)
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return x
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def train(args, model, device, train_loader, optimizer, epoch):
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model.train()
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for batch_idx, (data, target) in enumerate(train_loader):
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data = data.to(device)
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target = target.to(device)
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optimizer.zero_grad()
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output = model(data)
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loss = F.nll_loss(output, target)
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loss.backward()
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optimizer.step()
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if batch_idx % args.log_interval == 0:
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print(
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"Train Epoch: {} [{}/{} ({:.0f}%)]\tLoss: {:.6f}".format(
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epoch,
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batch_idx * len(data),
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len(train_loader.dataset),
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100.0 * batch_idx / len(train_loader),
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loss.item(),
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)
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)
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if args.dry_run:
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break
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def test(model, device, test_loader):
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model.eval()
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test_loss = 0
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correct = 0
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with torch.no_grad():
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for data, target in test_loader:
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data = data.to(device)
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target = target.to(device)
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output = model(data)
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test_loss += F.nll_loss(output, target, reduction="sum").item() # sum up batch loss
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pred = output.argmax(dim=1, keepdim=True) # get the index of the max log-probability
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correct += pred.eq(target.view_as(pred)).sum().item()
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test_loss /= len(test_loader.dataset)
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print(
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"\nTest set: Average loss: {:.4f}, Accuracy: {}/{} ({:.0f}%)\n".format(
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test_loss,
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correct,
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len(test_loader.dataset),
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100.0 * correct / len(test_loader.dataset),
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)
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)
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def main():
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# Training settings
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parser = argparse.ArgumentParser(description="PyTorch MNIST Example")
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parser.add_argument(
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"--batch-size",
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type=int,
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default=64,
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metavar="N",
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help="input batch size for training (default: 64)",
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)
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parser.add_argument(
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"--test-batch-size",
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type=int,
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default=1000,
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metavar="N",
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help="input batch size for testing (default: 1000)",
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)
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parser.add_argument(
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"--epochs",
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type=int,
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default=14,
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metavar="N",
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help="number of epochs to train (default: 14)",
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)
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parser.add_argument(
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"--lr",
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type=float,
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default=1.0,
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metavar="LR",
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help="learning rate (default: 1.0)",
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)
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parser.add_argument(
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"--gamma",
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type=float,
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default=0.7,
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metavar="M",
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help="Learning rate step gamma (default: 0.7)",
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)
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parser.add_argument(
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"--no-cuda", action="store_true", default=False, help="disables CUDA training"
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)
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parser.add_argument(
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"--dry-run",
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action="store_true",
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default=False,
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help="quickly check a single pass",
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)
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parser.add_argument("--seed", type=int, default=1, metavar="S", help="random seed (default: 1)")
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parser.add_argument(
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"--log-interval",
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type=int,
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default=10,
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metavar="N",
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help="how many batches to wait before logging training status",
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)
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parser.add_argument(
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"--save-model",
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action="store_true",
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default=False,
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help="For Saving the current model",
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)
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args = parser.parse_args()
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use_cuda = not args.no_cuda and torch.cuda.is_available()
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torch.manual_seed(args.seed)
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device = torch.device("cuda" if use_cuda else "cpu")
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train_kwargs = {"batch_size": args.batch_size}
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test_kwargs = {"batch_size": args.test_batch_size}
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if use_cuda:
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cuda_kwargs = {"num_workers": 1, "pin_memory": True, "shuffle": True}
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train_kwargs.update(cuda_kwargs)
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test_kwargs.update(cuda_kwargs)
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transform = transforms.Compose([
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transforms.ToTensor(),
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transforms.Normalize((0.1307,), (0.3081,)),
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])
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dataset1 = datasets.MNIST("../data", train=True, download=True, transform=transform)
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dataset2 = datasets.MNIST("../data", train=False, transform=transform)
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train_loader = torch.utils.data.DataLoader(dataset1, **train_kwargs)
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test_loader = torch.utils.data.DataLoader(dataset2, **test_kwargs)
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model = Net().to(device)
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scripted_model = torch.jit.script(model) # scripting the model
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optimizer = optim.Adadelta(model.parameters(), lr=args.lr)
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scheduler = StepLR(optimizer, step_size=1, gamma=args.gamma)
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for epoch in range(1, args.epochs + 1):
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train(args, scripted_model, device, train_loader, optimizer, epoch)
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scheduler.step()
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test(scripted_model, device, test_loader)
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with mlflow.start_run():
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mlflow.pytorch.log_model(scripted_model, name="model") # logging scripted model
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model_path = mlflow.get_artifact_uri("model")
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loaded_pytorch_model = mlflow.pytorch.load_model(model_path) # loading scripted model
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model.eval()
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with torch.no_grad():
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test_datapoint, test_target = next(iter(test_loader))
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prediction = loaded_pytorch_model(test_datapoint[0].unsqueeze(0).to(device))
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actual = test_target[0].item()
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predicted = torch.argmax(prediction).item()
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print(f"\nPREDICTION RESULT: ACTUAL: {actual!s}, PREDICTED: {predicted!s}")
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if __name__ == "__main__":
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main()
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@@ -0,0 +1,8 @@
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build_dependencies:
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- pip
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dependencies:
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- mlflow
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- cloudpickle==1.6.0
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- boto3
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- torchvision>=0.9.1
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- torch>=1.9.0
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