chore: import upstream snapshot with attribution
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import threading
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import h5py
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import numpy as np
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import time
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import sys
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import copy
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from pathlib import Path
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from loguru import logger
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import pymilvus
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from pymilvus import (
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connections,
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FieldSchema, CollectionSchema, DataType,
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Collection, utility
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)
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pymilvus_version = pymilvus.__version__
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all_index_types = ["IVF_FLAT", "IVF_SQ8", "HNSW"]
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default_index_params = [{"nlist": 128}, {"nlist": 128}, {"M": 48, "efConstruction": 200}]
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index_params_map = dict(zip(all_index_types, default_index_params))
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def gen_index_params(index_type, metric_type="L2"):
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default_index = {"index_type": "IVF_FLAT", "params": {"nlist": 128}, "metric_type": metric_type}
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index = copy.deepcopy(default_index)
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index["index_type"] = index_type
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index["params"] = index_params_map[index_type]
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if index_type in ["BIN_FLAT", "BIN_IVF_FLAT"]:
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index["metric_type"] = "HAMMING"
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return index
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def gen_search_param(index_type, metric_type="L2"):
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search_params = []
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if index_type in ["FLAT", "IVF_FLAT", "IVF_SQ8", "IVF_PQ"]:
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for nprobe in [10]:
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ivf_search_params = {"metric_type": metric_type, "params": {"nprobe": nprobe}}
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search_params.append(ivf_search_params)
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elif index_type in ["BIN_FLAT", "BIN_IVF_FLAT"]:
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for nprobe in [10]:
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bin_search_params = {"metric_type": "HAMMING", "params": {"nprobe": nprobe}}
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search_params.append(bin_search_params)
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elif index_type in ["HNSW"]:
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for ef in [150]:
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hnsw_search_param = {"metric_type": metric_type, "params": {"ef": ef}}
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search_params.append(hnsw_search_param)
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elif index_type == "ANNOY":
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for search_k in [1000]:
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annoy_search_param = {"metric_type": metric_type, "params": {"search_k": search_k}}
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search_params.append(annoy_search_param)
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else:
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logger.info("Invalid index_type.")
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raise Exception("Invalid index_type.")
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return search_params[0]
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def read_benchmark_hdf5(file_path):
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f = h5py.File(file_path, 'r')
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train = np.array(f["train"])
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test = np.array(f["test"])
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neighbors = np.array(f["neighbors"])
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f.close()
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return train, test, neighbors
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dim = 128
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TIMEOUT = 200
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def milvus_recall_test(host='127.0.0.1', index_type="HNSW"):
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logger.info(f"recall test for index type {index_type}")
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file_path = f"{str(Path(__file__).absolute().parent.parent.parent)}/assets/ann_hdf5/sift-128-euclidean.hdf5"
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train, test, neighbors = read_benchmark_hdf5(file_path)
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connections.connect(host=host, port="19530")
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default_fields = [
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FieldSchema(name="int64", dtype=DataType.INT64, is_primary=True),
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FieldSchema(name="float", dtype=DataType.FLOAT),
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FieldSchema(name="varchar", dtype=DataType.VARCHAR, max_length=65535),
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FieldSchema(name="float_vector", dtype=DataType.FLOAT_VECTOR, dim=dim)
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]
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default_schema = CollectionSchema(
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fields=default_fields, description="test collection")
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name = f"sift_128_euclidean_{index_type}"
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logger.info(f"Create collection {name}")
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collection = Collection(name=name, schema=default_schema)
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nb = len(train)
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batch_size = 50000
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epoch = int(nb / batch_size)
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t0 = time.time()
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for i in range(epoch):
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logger.info(f"epoch: {i}")
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start = i * batch_size
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end = (i + 1) * batch_size
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if end > nb:
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end = nb
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data = [
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[i for i in range(start, end)],
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[np.float32(i) for i in range(start, end)],
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[str(i) for i in range(start, end)],
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train[start:end]
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]
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collection.insert(data)
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t1 = time.time()
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logger.info(f"Insert {nb} vectors cost {t1 - t0:.4f} seconds")
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t0 = time.time()
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logger.info(f"Get collection entities...")
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if pymilvus_version >= "2.2.0":
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collection.flush()
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else:
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collection.num_entities
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logger.info(collection.num_entities)
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t1 = time.time()
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logger.info(f"Get collection entities cost {t1 - t0:.4f} seconds")
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# create index
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default_index = gen_index_params(index_type)
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logger.info(f"Create index...")
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t0 = time.time()
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collection.create_index(field_name="float_vector",
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index_params=default_index)
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t1 = time.time()
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logger.info(f"Create index cost {t1 - t0:.4f} seconds")
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# load collection
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replica_number = 1
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logger.info(f"load collection...")
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t0 = time.time()
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collection.load(replica_number=replica_number)
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t1 = time.time()
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logger.info(f"load collection cost {t1 - t0:.4f} seconds")
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res = utility.get_query_segment_info(name)
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cnt = 0
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logger.info(f"segments info: {res}")
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for segment in res:
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cnt += segment.num_rows
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assert cnt == collection.num_entities
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logger.info(f"wait for loading complete...")
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time.sleep(30)
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res = utility.get_query_segment_info(name)
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logger.info(f"segments info: {res}")
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# search
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topK = 100
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nq = 10000
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current_search_params = gen_search_param(index_type)
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# define output_fields of search result
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for i in range(3):
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t0 = time.time()
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logger.info(f"Search...")
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res = collection.search(
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test[:nq], "float_vector", current_search_params, topK, output_fields=["int64"], timeout=TIMEOUT
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)
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t1 = time.time()
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logger.info(f"search cost {t1 - t0:.4f} seconds")
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result_ids = []
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for hits in res:
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result_id = []
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for hit in hits:
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result_id.append(hit.entity.get("int64"))
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result_ids.append(result_id)
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# calculate recall
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true_ids = neighbors[:nq, :topK]
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sum_radio = 0.0
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logger.info(f"Calculate recall...")
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for index, item in enumerate(result_ids):
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# tmp = set(item).intersection(set(flat_id_list[index]))
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assert len(item) == len(true_ids[index])
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tmp = set(true_ids[index]).intersection(set(item))
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sum_radio = sum_radio + len(tmp) / len(item)
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recall = round(sum_radio / len(result_ids), 6)
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logger.info(f"recall={recall}")
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if index_type in ["IVF_PQ", "ANNOY"]:
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assert recall >= 0.6, f"recall={recall} < 0.6"
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else:
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assert 0.95 <= recall < 1.0, f"recall is {recall}, less than 0.95, greater than or equal to 1.0"
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# query
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expr = "int64 in [2,4,6,8]"
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output_fields = ["int64", "float"]
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res = collection.query(expr, output_fields, timeout=TIMEOUT)
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sorted_res = sorted(res, key=lambda k: k['int64'])
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for r in sorted_res:
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logger.info(r)
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if __name__ == "__main__":
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import argparse
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parser = argparse.ArgumentParser(description='config for recall test')
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parser.add_argument('--host', type=str,
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default="127.0.0.1", help='milvus server ip')
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args = parser.parse_args()
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host = args.host
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tasks = []
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for index_type in ["HNSW"]:
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milvus_recall_test(host, index_type)
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