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217 lines
6.6 KiB
Python
217 lines
6.6 KiB
Python
"""Field-level schema drift detection in the OpenAlex fetcher.
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A row-count floor catches the case where the whole fetch collapses,
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but not the case where every row loads but a key field (``h_index``,
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``cited_by_count``) has been renamed upstream. This test feeds
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OpenAlex-shaped JSONL with `h_index` silently renamed to `h_idx`
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and asserts that ``SchemaDriftError`` is raised instead of a
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silently corrupt snapshot.
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"""
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from __future__ import annotations
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import gzip
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import io
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import json
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from unittest.mock import MagicMock, patch
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import pytest
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from local_deep_research.journal_quality.data_sources.openalex import (
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OpenAlexSource,
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SchemaDriftError,
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)
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def _make_jsonl_gz(records):
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buf = io.BytesIO()
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with gzip.GzipFile(fileobj=buf, mode="wb") as gz:
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for rec in records:
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gz.write((json.dumps(rec) + "\n").encode("utf-8"))
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return buf.getvalue()
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def _manifest(num_parts: int):
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return {
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"files": [
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{"url": f"s3://openalex/data/jsonl/sources/part_{i}.gz"}
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for i in range(num_parts)
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]
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}
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def _response(*, status_code=200, content=b"", json_body=None):
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resp = MagicMock()
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resp.status_code = status_code
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resp.raise_for_status = MagicMock()
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resp.content = content
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resp.json = MagicMock(return_value=json_body or {})
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return resp
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def test_missing_h_index_raises_schema_drift(tmp_path):
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# 10010 records — enough to clear the row-count floor, but every
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# one of them carries h_idx (renamed) instead of h_index.
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drifted = [
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{
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"id": f"S{i}",
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"display_name": f"J {i}",
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"type": "journal",
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"summary_stats": {
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"h_idx": 5, # renamed from h_index
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"2yr_mean_citedness": 1.2,
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},
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"cited_by_count": 1000,
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"issn_l": None,
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}
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for i in range(10_010)
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]
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content = _make_jsonl_gz(drifted)
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with patch(
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"local_deep_research.security.safe_requests.safe_get_with_retries",
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) as mock_get:
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mock_get.side_effect = [
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_response(json_body=_manifest(1)), # manifest
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_response(content=content), # single partition
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]
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with pytest.raises(SchemaDriftError) as exc_info:
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OpenAlexSource().fetch(tmp_path)
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msg = str(exc_info.value)
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assert "h_index present in journal sample=False" in msg
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# Existing file must not have been overwritten.
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assert not (tmp_path / OpenAlexSource().filename).exists()
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def test_missing_cited_by_count_raises_schema_drift(tmp_path):
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drifted = [
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{
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"id": f"S{i}",
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"display_name": f"J {i}",
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"type": "journal",
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"summary_stats": {"h_index": 5, "2yr_mean_citedness": 1.2},
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# cited_by_count silently missing
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}
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for i in range(10_010)
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]
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content = _make_jsonl_gz(drifted)
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with patch(
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"local_deep_research.security.safe_requests.safe_get_with_retries",
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) as mock_get:
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mock_get.side_effect = [
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_response(json_body=_manifest(1)),
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_response(content=content),
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]
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with pytest.raises(SchemaDriftError) as exc_info:
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OpenAlexSource().fetch(tmp_path)
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assert "cited_by_count present in journal sample=False" in str(
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exc_info.value
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)
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def test_healthy_snapshot_passes(tmp_path):
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healthy = [
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{
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"id": f"S{i}",
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"display_name": f"J {i}",
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"type": "journal",
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"summary_stats": {"h_index": 5, "2yr_mean_citedness": 1.2},
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"cited_by_count": 1000,
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}
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for i in range(10_010)
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]
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content = _make_jsonl_gz(healthy)
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with patch(
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"local_deep_research.security.safe_requests.safe_get_with_retries",
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) as mock_get:
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mock_get.side_effect = [
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_response(json_body=_manifest(1)),
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_response(content=content),
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]
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count = OpenAlexSource().fetch(tmp_path)
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assert count == 10_010
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assert (tmp_path / OpenAlexSource().filename).exists()
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def test_missing_id_raises_schema_drift(tmp_path):
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"""If the ``id`` field is renamed (e.g. to ``source_id``), every record
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gets silently skipped at parse time. Without a dedicated drift check
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this surfaces only as the generic row-count floor RuntimeError, hiding
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the real cause. Guard that the ``SchemaDriftError`` path fires first.
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"""
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drifted = [
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{
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"source_id": f"S{i}", # renamed from id
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"display_name": f"J {i}",
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"type": "journal",
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"summary_stats": {"h_index": 5, "2yr_mean_citedness": 1.2},
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"cited_by_count": 1000,
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}
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for i in range(10_010)
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]
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content = _make_jsonl_gz(drifted)
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with patch(
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"local_deep_research.security.safe_requests.safe_get_with_retries",
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) as mock_get:
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mock_get.side_effect = [
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_response(json_body=_manifest(1)),
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_response(content=content),
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]
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with pytest.raises(SchemaDriftError) as exc_info:
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OpenAlexSource().fetch(tmp_path)
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msg = str(exc_info.value)
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assert "none carried an 'id' field" in msg
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assert not (tmp_path / OpenAlexSource().filename).exists()
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def test_conference_only_snapshot_does_not_false_trigger(tmp_path):
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"""Conferences and other non-journal source types legitimately lack
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``h_index`` — a sample that's all conferences must not raise drift.
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Journal records with ``h_index`` drive the check; conference records
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are excluded from the sample.
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"""
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mixed = []
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# 10,010 conference records without h_index (would false-trigger if
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# the sample were unfiltered).
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mixed.extend(
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{
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"id": f"C{i}",
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"display_name": f"Conf {i}",
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"type": "conference",
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"summary_stats": {"2yr_mean_citedness": 1.2},
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"cited_by_count": 500,
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}
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for i in range(10_010)
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)
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# 100 journals with h_index — enough to fill the drift sample.
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mixed.extend(
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{
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"id": f"J{i}",
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"display_name": f"Journal {i}",
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"type": "journal",
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"summary_stats": {"h_index": 5, "2yr_mean_citedness": 1.2},
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"cited_by_count": 1000,
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}
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for i in range(100)
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)
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content = _make_jsonl_gz(mixed)
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with patch(
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"local_deep_research.security.safe_requests.safe_get_with_retries",
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) as mock_get:
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mock_get.side_effect = [
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_response(json_body=_manifest(1)),
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_response(content=content),
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]
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count = OpenAlexSource().fetch(tmp_path)
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assert count == 10_110
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assert (tmp_path / OpenAlexSource().filename).exists()
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