chore: import upstream snapshot with attribution

.github/workflows/archive/release-all-mlwb.yaml

@@ -0,0 +1,44 @@
+# https://github.com/marketplace/actions/manylinux-wheel-builder
+name: pypi deployer
+on:
+  workflow_dispatch
+  # push
+  # push:
+  #   tags:
+  #     - "v*" # Push events to matching v*, i.e. v1.0, v20.15.10
+jobs:
+  Linux-build:
+    runs-on: ubuntu-22.04
+    env:
+      TWINE_USERNAME: ${{ secrets.TWINE_USERNAME }}
+      TWINE_PASSWORD: ${{ secrets.TWINE_PASSWORD }}
+    steps:
+      - uses: actions/checkout@v2
+      - name: build and upload manylinux wheels
+        # cSpell:disable
+        uses: Niraj-Kamdar/manylinux-wheel-builder@master
+        # cSpell:enable
+  Matrix-build:
+    runs-on: ${{ matrix.os }}
+    env:
+      TWINE_USERNAME: ${{ secrets.TWINE_USERNAME }}
+      TWINE_PASSWORD: ${{ secrets.TWINE_PASSWORD }}
+    strategy:
+      matrix:
+        python-version: [3.6, 3.7, 3.8, 3.9]
+        os: [macos-latest, windows-latest]
+    steps:
+      - uses: actions/checkout@v2
+      - name: Set up Python
+        uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: build wheel
+        run: |
+          pip install wheel
+          python setup.py bdist_wheel
+      - name: upload wheel
+        run: |
+          pip install twine
+          twine upload dist/*
+        continue-on-error: true

.github/workflows/archive/release-macos.yaml

@@ -0,0 +1,41 @@
+name: Build and Publish to PyPI (macOS)
+
+# on: push
+# disabled on push cuz Error: Container action is only supported on Linux
+# no solution found yet
+on: workflow_dispatch
+
+jobs:
+  build-n-publish:
+    # name: Build and publish Python 🐍 distributions 📦 to PyPI and TestPyPI
+    name: Build and publish Python 🐍 distributions 📦 to PyPI
+    # runs-on: ubuntu-22.04
+    runs-on: macos-latest
+    strategy:
+      matrix:
+        python-version: ["3.6", "3.7", "3.8", "3.9"]
+    steps:
+      - uses: actions/checkout@v2
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install pypa/build
+        run: >-
+          python -m
+          pip install
+          build
+          --user
+      - name: Build a binary wheel and a source tarball
+        run: >-
+          python -m
+          build
+          --sdist
+          --wheel
+          --outdir dist/
+          .
+      - name: Publish distribution 📦 to PyPI
+        # if: startsWith(github.ref, 'refs/tags')
+        uses: pypa/gh-action-pypi-publish@master
+        with:
+          password: ${{ secrets.PYPI_API_TOKEN }}

.github/workflows/archive/release-manylinux.yaml

@@ -0,0 +1,50 @@
+name: Build and Publish to PyPI (manylinux)
+
+on: workflow_dispatch
+
+jobs:
+  build-n-publish:
+    # name: Build and publish Python 🐍 distributions 📦 to PyPI and TestPyPI
+    name: Build and publish Python 🐍 distributions 📦 to PyPI
+    # runs-on: ubuntu-22.04
+    runs-on: ubuntu-22.04
+    # strategy:
+    #   matrix:
+    #     python-version: ["3.6", "3.7", "3.8", "3.9"]
+    steps:
+      - uses: actions/checkout@v2
+      # - name: Set up Python ${{ matrix.python-version }}
+      #   uses: actions/setup-python@v2
+      #   with:
+      #     python-version: ${{ matrix.python-version }}
+      # - name: Install pypa/build
+      #   run: >-
+      #     python -m
+      #     pip install
+      #     build
+      #     --user
+      # - name: Build a binary wheel and a source tarball
+      #   run: >-
+      #     python -m
+      #     build
+      #     --sdist
+      #     --wheel
+      #     --outdir dist/
+      #     .
+      # cSpell:disable
+      - name: Build on manylinux
+        uses: RalfG/python-wheels-manylinux-build@v0.4.2-manylinux2014_x86_64
+        # cSpell:enable
+        with:
+          python-versions: "cp36-cp36m cp37-cp37m cp38-cp38m cp39-cp39m"
+          # build-requirements: "cython numpy"
+          # system-packages: "lrzip-devel zlib-devel"
+          # pre-build-command: "sh pre-build-script.sh"
+          # package-path: "my_project"
+          # pip-wheel-args: "-w ./dist --no-deps"
+          # pip-wheel-args: "--sdist --wheel --outdir dist/"
+      - name: Publish distribution 📦 to PyPI
+        # if: startsWith(github.ref, 'refs/tags')
+        uses: pypa/gh-action-pypi-publish@master
+        with:
+          password: ${{ secrets.PYPI_API_TOKEN }}

.github/workflows/benchmarking.yaml

@@ -0,0 +1,15 @@
+name: "Run Teddy's benchmarking workflow"
+on:
+  # push:
+  # pull_request:
+  workflow_dispatch:
+
+jobs:
+  trigger:
+    permissions: write-all
+    name: "Trigger Teddy's benchmarking workflow"
+    uses: tddschn/easygraph-bench/.github/workflows/bench-all.yaml@master
+    secrets:
+      GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+    with:
+      releaseTag: "CI-easygraph-bench"

.github/workflows/diagram.yml

@@ -0,0 +1,16 @@
+name: Create diagram
+on:
+  workflow_dispatch: {}
+  # push:
+  #   branches:
+  #     - master
+jobs:
+  get_data:
+    runs-on: ubuntu-22.04
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@master
+      - name: Update diagram
+        uses: githubocto/repo-visualizer@main
+        with:
+          excluded_paths: "ignore,.github"

.github/workflows/pr_code_check.yaml

@@ -0,0 +1,50 @@
+name: PR code review
+
+on:
+  workflow_dispatch:
+  pull_request:
+    branches:
+      - pybind11
+  push:
+    branches:
+      - pybind11
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  build:
+    strategy:
+      fail-fast: false
+      matrix:
+        platform: [windows-latest, macos-latest, ubuntu-latest]
+        python-version: ["3.9", "3.12"]
+
+    runs-on: ${{ matrix.platform }}
+
+    steps:
+    - uses: actions/checkout@v4
+      with:
+        submodules: true
+
+    - uses: actions/setup-python@v5
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    - name: Upgrade pip
+      run: python -m pip install --upgrade pip
+
+    - name: Installing dependencies
+      uses: py-actions/py-dependency-install@v4
+      with:
+        path: "requirements.txt"
+
+    - name: Add requirements
+      run: python -m pip install --upgrade setuptools wheel build packaging
+
+    - name: Build and install
+      run: pip install --verbose .
+
+    - name: Smoke test
+      run: python -c "import os, tempfile; os.chdir(tempfile.gettempdir()); import easygraph as eg; G = eg.Graph(); G.add_edge(1, 2); assert G.number_of_nodes() == 2; assert G.number_of_edges() == 1"

.github/workflows/pre-commit.yaml

@@ -0,0 +1,38 @@
+name: pre-commit
+
+on:
+  workflow_dispatch:
+  pull_request:
+    branches:
+      - pybind11
+  push:
+    branches:
+      - pybind11
+
+jobs:
+  pre-commit:
+    runs-on: ubuntu-22.04
+    steps:
+    - uses: actions/checkout@v4
+      with:
+        fetch-depth: 0
+
+    - uses: actions/setup-python@v5
+      with:
+        python-version: '3.10'
+
+    - name: Install pre-commit
+      run: python -m pip install pre-commit
+
+    - name: Run pre-commit on changed files
+      shell: bash
+      run: |
+        if [[ "${{ github.event_name }}" == "pull_request" ]]; then
+          base_ref="${{ github.event.pull_request.base.sha }}"
+        elif [[ -n "${{ github.event.before }}" && ! "${{ github.event.before }}" =~ ^0+$ ]]; then
+          base_ref="${{ github.event.before }}"
+        else
+          base_ref="$(git rev-parse HEAD~1)"
+        fi
+
+        pre-commit run --show-diff-on-failure --color=always --from-ref "$base_ref" --to-ref "${{ github.sha }}"

.github/workflows/stale.yaml

@@ -0,0 +1,19 @@
+name: "Close stale issues and PRs"
+on:
+  schedule:
+    - cron: "30 1 * * *"
+
+jobs:
+  stale:
+    runs-on: ubuntu-22.04
+    steps:
+      - uses: actions/stale@v4
+        with:
+          stale-issue-message: "This issue is stale because it has been open 30 days with no activity. Remove stale label or comment or this will be closed in 5 days."
+          stale-pr-message: "This PR is stale because it has been open 45 days with no activity. Remove stale label or comment or this will be closed in 10 days."
+          close-issue-message: "This issue was closed because it has been stalled for 5 days with no activity."
+          close-pr-message: "This PR was closed because it has been stalled for 10 days with no activity."
+          days-before-issue-stale: 30
+          days-before-pr-stale: 45
+          days-before-issue-close: 5
+          days-before-pr-close: 10

.github/workflows/test.yaml

@@ -0,0 +1,46 @@
+name: Test the package with pytest
+
+on:
+  workflow_dispatch:
+  pull_request:
+    branches:
+      - pybind11
+  push:
+    branches:
+      - pybind11
+
+jobs:
+  pytest:
+    name: Test with pytest
+    runs-on: ubuntu-22.04
+    strategy:
+      fail-fast: false
+      matrix:
+        # ubuntu 22.04 has deprecated python 3.6
+        python-version: [ "3.8", "3.9", "3.10","3.11", "3.12"]
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          submodules: recursive
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Installing dependencies
+        uses: py-actions/py-dependency-install@v4
+        with:
+          path: "requirements.txt"
+
+      - name: Installing test dependencies
+        run: |
+          pip install pytest
+
+      - name: Build and install package
+        run: |
+          pip install .
+
+      - name: Test with pytest
+        run: |
+          pytest easygraph --disable-warnings

.github/workflows/translator.yaml

@@ -0,0 +1,34 @@
+#name: 'issue-translator'
+#on:
+#  issue_comment:
+#    types: [created]
+#  issues:
+#    types: [opened]
+#
+#jobs:
+#  build:
+#    runs-on: ubuntu-latest
+#    steps:
+#      - uses: usthe/issues-translate-action@v2.7
+#        with:
+#          IS_MODIFY_TITLE: false
+#          # not require, default false, . Decide whether to modify the issue title
+#          # if true, the robot account @Issues-translate-bot must have modification permissions, invite @Issues-translate-bot to your project or use your custom bot.
+#          CUSTOM_BOT_NOTE: Bot detected the issue body's language is not English, translate it automatically. 👯👭🏻🧑‍🤝‍🧑👫🧑🏿‍🤝‍🧑🏻👩🏾‍🤝‍👨🏿👬🏿
+#          # not require. Customize the translation robot prefix message.
+name: 'issue-translator'
+on:
+  issue_comment:
+    types: [created]
+  issues:
+    types: [opened]
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: usthe/issues-translate-action@v2.7
+        with:
+          CUSTOM_BOT_NOTE: hello
+          BOT_GITHUB_TOKEN: ${{ secrets.BOT_GITHUB_TOKEN }}
+          

.github/workflows/wheel_publish.yml

@@ -0,0 +1,75 @@
+name: Build,download and publish wheels
+on: workflow_dispatch
+jobs:
+  build_sdist:
+    name: Build source distribution
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      #  sdist used to compile in user local environment
+      - name: Build sdist
+        run: pipx run build --sdist
+
+      - uses: actions/upload-artifact@v4
+        with:
+          name: cibw-sdist
+          path: dist/*.tar.gz
+
+  build_wheels:
+      name: Build wheels on ${{ matrix.os }}
+      runs-on: ${{ matrix.os }}
+      strategy:
+        matrix:
+          # macos-13 is closing down, macos-15 is apple silicon
+          # macos-15-intel is for the x86_64
+          # note: Apple has discontinued support for the x86_64 (Intel) architecture
+          os: [ ubuntu-latest, windows-latest,  macos-15, macos-15-intel]
+#          modify python version in project.toml
+      steps: 
+      # 检出代码
+      - name: Checkout code
+        uses: actions/checkout@v4
+        with:
+          submodules: true
+      
+      - uses: actions/setup-python@v5
+
+      # You can test your matrix by printing the current Python version
+      - name: Display Python version
+        run: python -c "import sys; print(sys.version)"
+      - name: Install dependencies
+        run: python -m pip install --upgrade pip setuptools wheel build packaging
+
+
+      - name: Build wheels
+        uses: pypa/cibuildwheel@v2.23.3
+        with:
+          output-dir: dist/
+
+      - name: Upload wheels
+        uses: actions/upload-artifact@v4
+        with:
+          name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }}
+          path: dist/*.whl
+
+
+  upload_pypi:
+      needs: [build_wheels, build_sdist]
+      runs-on: ubuntu-latest
+      environment: pypi
+      permissions:
+        id-token: write
+      steps:
+        - uses: actions/download-artifact@v4
+          with:
+            # unpacks all CIBW artifacts into dist/
+            pattern: cibw-*
+            path: dist
+            merge-multiple: true
+
+        - name: Publish distribution 📦 to PyPI
+          uses: pypa/gh-action-pypi-publish@v1.12.4
+          with:
+            password: ${{ secrets.PYPI_API_TOKEN }}
+            skip-existing: true
+