196 lines
6.5 KiB
Python
196 lines
6.5 KiB
Python
"""Torch Module for Relational graph convolution layer"""
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# pylint: disable= no-member, arguments-differ, invalid-name
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import torch as th
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from torch import nn
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from .... import function as fn
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from ..linear import TypedLinear
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class RelGraphConv(nn.Module):
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r"""Relational graph convolution layer from `Modeling Relational Data with Graph
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Convolutional Networks <https://arxiv.org/abs/1703.06103>`__
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It can be described in as below:
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.. math::
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h_i^{(l+1)} = \sigma(\sum_{r\in\mathcal{R}}
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\sum_{j\in\mathcal{N}^r(i)}e_{j,i}W_r^{(l)}h_j^{(l)}+W_0^{(l)}h_i^{(l)})
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where :math:`\mathcal{N}^r(i)` is the neighbor set of node :math:`i` w.r.t. relation
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:math:`r`. :math:`e_{j,i}` is the normalizer. :math:`\sigma` is an activation
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function. :math:`W_0` is the self-loop weight.
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The basis regularization decomposes :math:`W_r` by:
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.. math::
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W_r^{(l)} = \sum_{b=1}^B a_{rb}^{(l)}V_b^{(l)}
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where :math:`B` is the number of bases, :math:`V_b^{(l)}` are linearly combined
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with coefficients :math:`a_{rb}^{(l)}`.
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The block-diagonal-decomposition regularization decomposes :math:`W_r` into :math:`B`
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number of block diagonal matrices. We refer :math:`B` as the number of bases.
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The block regularization decomposes :math:`W_r` by:
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.. math::
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W_r^{(l)} = \oplus_{b=1}^B Q_{rb}^{(l)}
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where :math:`B` is the number of bases, :math:`Q_{rb}^{(l)}` are block
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bases with shape :math:`R^{(d^{(l+1)}/B)*(d^{l}/B)}`.
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Parameters
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----------
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in_feat : int
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Input feature size; i.e, the number of dimensions of :math:`h_j^{(l)}`.
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out_feat : int
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Output feature size; i.e., the number of dimensions of :math:`h_i^{(l+1)}`.
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num_rels : int
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Number of relations.
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regularizer : str, optional
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Which weight regularizer to use ("basis", "bdd" or ``None``):
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- "basis" is for basis-decomposition.
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- "bdd" is for block-diagonal-decomposition.
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- ``None`` applies no regularization.
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Default: ``None``.
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num_bases : int, optional
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Number of bases. It comes into effect when a regularizer is applied.
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If ``None``, it uses number of relations (``num_rels``). Default: ``None``.
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Note that ``in_feat`` and ``out_feat`` must be divisible by ``num_bases``
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when applying "bdd" regularizer.
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bias : bool, optional
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True if bias is added. Default: ``True``.
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activation : callable, optional
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Activation function. Default: ``None``.
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self_loop : bool, optional
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True to include self loop message. Default: ``True``.
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dropout : float, optional
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Dropout rate. Default: ``0.0``
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layer_norm: bool, optional
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True to add layer norm. Default: ``False``
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Examples
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--------
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>>> import dgl
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>>> import numpy as np
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>>> import torch as th
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>>> from dgl.nn import RelGraphConv
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>>>
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>>> g = dgl.graph(([0,1,2,3,2,5], [1,2,3,4,0,3]))
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>>> feat = th.ones(6, 10)
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>>> conv = RelGraphConv(10, 2, 3, regularizer='basis', num_bases=2)
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>>> etype = th.tensor([0,1,2,0,1,2])
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>>> res = conv(g, feat, etype)
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>>> res
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tensor([[ 0.3996, -2.3303],
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[-0.4323, -0.1440],
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[ 0.3996, -2.3303],
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[ 2.1046, -2.8654],
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[-0.4323, -0.1440],
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[-0.1309, -1.0000]], grad_fn=<AddBackward0>)
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"""
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def __init__(
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self,
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in_feat,
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out_feat,
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num_rels,
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regularizer=None,
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num_bases=None,
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bias=True,
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activation=None,
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self_loop=True,
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dropout=0.0,
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layer_norm=False,
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):
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super().__init__()
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if regularizer is not None and num_bases is None:
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num_bases = num_rels
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self.linear_r = TypedLinear(
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in_feat, out_feat, num_rels, regularizer, num_bases
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)
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self.bias = bias
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self.activation = activation
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self.self_loop = self_loop
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self.layer_norm = layer_norm
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# bias
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if self.bias:
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self.h_bias = nn.Parameter(th.Tensor(out_feat))
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nn.init.zeros_(self.h_bias)
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# TODO(minjie): consider remove those options in the future to make
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# the module only about graph convolution.
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# layer norm
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if self.layer_norm:
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self.layer_norm_weight = nn.LayerNorm(
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out_feat, elementwise_affine=True
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)
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# weight for self loop
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if self.self_loop:
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self.loop_weight = nn.Parameter(th.Tensor(in_feat, out_feat))
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nn.init.xavier_uniform_(
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self.loop_weight, gain=nn.init.calculate_gain("relu")
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)
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self.dropout = nn.Dropout(dropout)
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def message(self, edges):
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"""Message function."""
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m = self.linear_r(edges.src["h"], edges.data["etype"], self.presorted)
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if "norm" in edges.data:
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m = m * edges.data["norm"]
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return {"m": m}
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def forward(self, g, feat, etypes, norm=None, *, presorted=False):
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"""Forward computation.
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Parameters
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----------
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g : DGLGraph
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The graph.
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feat : torch.Tensor
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A 2D tensor of node features. Shape: :math:`(|V|, D_{in})`.
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etypes : torch.Tensor or list[int]
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An 1D integer tensor of edge types. Shape: :math:`(|E|,)`.
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norm : torch.Tensor, optional
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An 1D tensor of edge norm value. Shape: :math:`(|E|,)`.
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presorted : bool, optional
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Whether the edges of the input graph have been sorted by their types.
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Forward on pre-sorted graph may be faster. Graphs created
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by :func:`~dgl.to_homogeneous` automatically satisfy the condition.
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Also see :func:`~dgl.reorder_graph` for sorting edges manually.
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Returns
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-------
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torch.Tensor
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New node features. Shape: :math:`(|V|, D_{out})`.
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"""
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self.presorted = presorted
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with g.local_scope():
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g.srcdata["h"] = feat
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if norm is not None:
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g.edata["norm"] = norm
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g.edata["etype"] = etypes
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# message passing
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g.update_all(self.message, fn.sum("m", "h"))
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# apply bias and activation
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h = g.dstdata["h"]
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if self.layer_norm:
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h = self.layer_norm_weight(h)
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if self.bias:
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h = h + self.h_bias
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if self.self_loop:
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h = h + feat[: g.num_dst_nodes()] @ self.loop_weight
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if self.activation:
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h = self.activation(h)
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h = self.dropout(h)
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return h
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