chore: import upstream snapshot with attribution
This commit is contained in:
@@ -0,0 +1,492 @@
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"""Launching tool for DGL distributed training"""
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import argparse
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import json
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import logging
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import multiprocessing
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import os
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import re
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import signal
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import stat
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import subprocess
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import sys
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import time
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from functools import partial
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from threading import Thread
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from typing import Optional
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DEFAULT_PORT = 30050
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def cleanup_proc(get_all_remote_pids, conn):
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"""This process tries to clean up the remote training tasks."""
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print("cleanupu process runs")
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# This process should not handle SIGINT.
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signal.signal(signal.SIGINT, signal.SIG_IGN)
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data = conn.recv()
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# If the launch process exits normally, this process doesn't need to do anything.
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if data == "exit":
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sys.exit(0)
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else:
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remote_pids = get_all_remote_pids()
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# Otherwise, we need to ssh to each machine and kill the training jobs.
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for (ip, port), pids in remote_pids.items():
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kill_process(ip, port, pids)
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print("cleanup process exits")
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def kill_process(ip, port, pids):
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"""ssh to a remote machine and kill the specified processes."""
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curr_pid = os.getpid()
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killed_pids = []
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# If we kill child processes first, the parent process may create more again. This happens
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# to Python's process pool. After sorting, we always kill parent processes first.
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pids.sort()
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for pid in pids:
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assert curr_pid != pid
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print("kill process {} on {}:{}".format(pid, ip, port), flush=True)
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kill_cmd = (
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"ssh -o StrictHostKeyChecking=no -p "
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+ str(port)
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+ " "
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+ ip
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+ " 'kill {}'".format(pid)
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)
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subprocess.run(kill_cmd, shell=True)
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killed_pids.append(pid)
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# It's possible that some of the processes are not killed. Let's try again.
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for i in range(3):
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killed_pids = get_killed_pids(ip, port, killed_pids)
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if len(killed_pids) == 0:
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break
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else:
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killed_pids.sort()
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for pid in killed_pids:
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print(
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"kill process {} on {}:{}".format(pid, ip, port), flush=True
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)
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kill_cmd = (
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"ssh -o StrictHostKeyChecking=no -p "
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+ str(port)
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+ " "
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+ ip
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+ " 'kill -9 {}'".format(pid)
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)
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subprocess.run(kill_cmd, shell=True)
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def get_killed_pids(ip, port, killed_pids):
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"""Get the process IDs that we want to kill but are still alive."""
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killed_pids = [str(pid) for pid in killed_pids]
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killed_pids = ",".join(killed_pids)
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ps_cmd = (
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"ssh -o StrictHostKeyChecking=no -p "
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+ str(port)
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+ " "
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+ ip
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+ " 'ps -p {} -h'".format(killed_pids)
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)
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res = subprocess.run(ps_cmd, shell=True, stdout=subprocess.PIPE)
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pids = []
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for p in res.stdout.decode("utf-8").split("\n"):
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l = p.split()
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if len(l) > 0:
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pids.append(int(l[0]))
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return pids
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def execute_remote(
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cmd: str, ip: str, port: int, username: Optional[str] = ""
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) -> Thread:
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"""Execute command line on remote machine via ssh.
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Args:
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cmd: User-defined command (udf) to execute on the remote host.
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ip: The ip-address of the host to run the command on.
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port: Port number that the host is listening on.
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thread_list:
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username: Optional. If given, this will specify a username to use when issuing commands over SSH.
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Useful when your infra requires you to explicitly specify a username to avoid permission issues.
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Returns:
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thread: The Thread whose run() is to run the `cmd` on the remote host. Returns when the cmd completes
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on the remote host.
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"""
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ip_prefix = ""
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if username:
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ip_prefix += "{username}@".format(username=username)
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# Construct ssh command that executes `cmd` on the remote host
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ssh_cmd = "ssh -o StrictHostKeyChecking=no -p {port} {ip_prefix}{ip} '{cmd}'".format(
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port=str(port),
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ip_prefix=ip_prefix,
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ip=ip,
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cmd=cmd,
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)
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# thread func to run the job
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def run(ssh_cmd):
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subprocess.check_call(ssh_cmd, shell=True)
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thread = Thread(target=run, args=(ssh_cmd,))
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thread.setDaemon(True)
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thread.start()
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return thread
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def get_remote_pids(ip, port, cmd_regex):
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"""Get the process IDs that run the command in the remote machine."""
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pids = []
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curr_pid = os.getpid()
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# Here we want to get the python processes. We may get some ssh processes, so we should filter them out.
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ps_cmd = (
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"ssh -o StrictHostKeyChecking=no -p "
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+ str(port)
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+ " "
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+ ip
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+ " 'ps -aux | grep python | grep -v StrictHostKeyChecking'"
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)
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res = subprocess.run(ps_cmd, shell=True, stdout=subprocess.PIPE)
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for p in res.stdout.decode("utf-8").split("\n"):
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l = p.split()
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if len(l) < 2:
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continue
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# We only get the processes that run the specified command.
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res = re.search(cmd_regex, p)
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if res is not None and int(l[1]) != curr_pid:
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pids.append(l[1])
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pid_str = ",".join([str(pid) for pid in pids])
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ps_cmd = (
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"ssh -o StrictHostKeyChecking=no -p "
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+ str(port)
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+ " "
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+ ip
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+ " 'pgrep -P {}'".format(pid_str)
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)
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res = subprocess.run(ps_cmd, shell=True, stdout=subprocess.PIPE)
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pids1 = res.stdout.decode("utf-8").split("\n")
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all_pids = []
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for pid in set(pids + pids1):
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if pid == "" or int(pid) == curr_pid:
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continue
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all_pids.append(int(pid))
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all_pids.sort()
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return all_pids
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def get_all_remote_pids(hosts, ssh_port, udf_command):
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"""Get all remote processes."""
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remote_pids = {}
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for node_id, host in enumerate(hosts):
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ip, _ = host
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# When creating training processes in remote machines, we may insert some arguments
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# in the commands. We need to use regular expressions to match the modified command.
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cmds = udf_command.split()
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new_udf_command = " .*".join(cmds)
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pids = get_remote_pids(ip, ssh_port, new_udf_command)
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remote_pids[(ip, ssh_port)] = pids
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return remote_pids
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def construct_torch_dist_launcher_cmd(
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num_trainers: int,
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num_nodes: int,
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node_rank: int,
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master_addr: str,
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master_port: int,
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) -> str:
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"""Constructs the torch distributed launcher command.
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Helper function.
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Args:
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num_trainers:
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num_nodes:
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node_rank:
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master_addr:
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master_port:
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Returns:
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cmd_str.
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"""
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torch_cmd_template = (
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"-m torch.distributed.launch "
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"--nproc_per_node={nproc_per_node} "
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"--nnodes={nnodes} "
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"--node_rank={node_rank} "
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"--master_addr={master_addr} "
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"--master_port={master_port}"
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)
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return torch_cmd_template.format(
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nproc_per_node=num_trainers,
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nnodes=num_nodes,
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node_rank=node_rank,
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master_addr=master_addr,
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master_port=master_port,
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)
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def wrap_udf_in_torch_dist_launcher(
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udf_command: str,
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num_trainers: int,
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num_nodes: int,
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node_rank: int,
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master_addr: str,
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master_port: int,
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) -> str:
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"""Wraps the user-defined function (udf_command) with the torch.distributed.launch module.
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Example: if udf_command is "python3 run/some/trainer.py arg1 arg2", then new_df_command becomes:
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"python3 -m torch.distributed.launch <TORCH DIST ARGS> run/some/trainer.py arg1 arg2
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udf_command is assumed to consist of pre-commands (optional) followed by the python launcher script (required):
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Examples:
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# simple
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python3.7 path/to/some/trainer.py arg1 arg2
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# multi-commands
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(cd some/dir && python3.7 path/to/some/trainer.py arg1 arg2)
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IMPORTANT: If udf_command consists of multiple python commands, then this will result in undefined behavior.
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Args:
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udf_command:
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num_trainers:
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num_nodes:
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node_rank:
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master_addr:
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master_port:
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Returns:
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"""
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torch_dist_cmd = construct_torch_dist_launcher_cmd(
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num_trainers=num_trainers,
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num_nodes=num_nodes,
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node_rank=node_rank,
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master_addr=master_addr,
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master_port=master_port,
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)
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# Auto-detect the python binary that kicks off the distributed trainer code.
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# Note: This allowlist order matters, this will match with the FIRST matching entry. Thus, please add names to this
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# from most-specific to least-specific order eg:
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# (python3.7, python3.8) -> (python3)
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# The allowed python versions are from this: https://www.dgl.ai/pages/start.html
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python_bin_allowlist = (
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"python3.6",
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"python3.7",
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"python3.8",
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"python3.9",
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"python3",
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# for backwards compatibility, accept python2 but technically DGL is a py3 library, so this is not recommended
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"python2.7",
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"python2",
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)
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# If none of the candidate python bins match, then we go with the default `python`
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python_bin = "python"
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for candidate_python_bin in python_bin_allowlist:
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if candidate_python_bin in udf_command:
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python_bin = candidate_python_bin
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break
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# transforms the udf_command from:
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# python path/to/dist_trainer.py arg0 arg1
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# to:
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# python -m torch.distributed.launch [DIST TORCH ARGS] path/to/dist_trainer.py arg0 arg1
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# Note: if there are multiple python commands in `udf_command`, this may do the Wrong Thing, eg launch each
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# python command within the torch distributed launcher.
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new_udf_command = udf_command.replace(
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python_bin, f"{python_bin} {torch_dist_cmd}"
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)
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return new_udf_command
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def construct_dgl_server_env_vars(
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ip_config: str,
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num_proc_per_machine: int,
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pythonpath: Optional[str] = "",
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) -> str:
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"""Constructs the DGL server-specific env vars string that are required for DGL code to behave in the correct
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server role.
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Convenience function.
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Args:
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ip_config: IP config file containing IP addresses of cluster hosts.
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Relative path to workspace.
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num_proc_per_machine:
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pythonpath: Optional. If given, this will pass this as PYTHONPATH.
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Returns:
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server_env_vars: The server-specific env-vars in a string format, friendly for CLI execution.
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"""
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server_env_vars_template = (
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"DGL_IP_CONFIG={DGL_IP_CONFIG} "
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"DGL_NUM_SERVER={DGL_NUM_SERVER} "
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"{suffix_optional_envvars}"
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)
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suffix_optional_envvars = ""
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if pythonpath:
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suffix_optional_envvars += f"PYTHONPATH={pythonpath} "
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return server_env_vars_template.format(
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DGL_IP_CONFIG=ip_config,
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DGL_NUM_SERVER=num_proc_per_machine,
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suffix_optional_envvars=suffix_optional_envvars,
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)
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def wrap_cmd_with_local_envvars(cmd: str, env_vars: str) -> str:
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"""Wraps a CLI command with desired env vars with the following properties:
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(1) env vars persist for the entire `cmd`, even if it consists of multiple "chained" commands like:
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cmd = "ls && pwd && python run/something.py"
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(2) env vars don't pollute the environment after `cmd` completes.
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Example:
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>>> cmd = "ls && pwd"
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>>> env_vars = "VAR1=value1 VAR2=value2"
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>>> wrap_cmd_with_local_envvars(cmd, env_vars)
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"(export VAR1=value1 VAR2=value2; ls && pwd)"
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Args:
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cmd:
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env_vars: A string containing env vars, eg "VAR1=val1 VAR2=val2"
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Returns:
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cmd_with_env_vars:
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"""
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# use `export` to persist env vars for entire cmd block. required if udf_command is a chain of commands
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# also: wrap in parens to not pollute env:
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# https://stackoverflow.com/a/45993803
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return f"(export {env_vars}; {cmd})"
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def wrap_cmd_with_extra_envvars(cmd: str, env_vars: list) -> str:
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"""Wraps a CLI command with extra env vars
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Example:
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>>> cmd = "ls && pwd"
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>>> env_vars = ["VAR1=value1", "VAR2=value2"]
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>>> wrap_cmd_with_extra_envvars(cmd, env_vars)
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"(export VAR1=value1 VAR2=value2; ls && pwd)"
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Args:
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cmd:
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env_vars: A list of strings containing env vars, e.g., ["VAR1=value1", "VAR2=value2"]
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Returns:
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cmd_with_env_vars:
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"""
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env_vars = " ".join(env_vars)
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return wrap_cmd_with_local_envvars(cmd, env_vars)
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def submit_jobs(args, udf_command):
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"""Submit distributed jobs (server and client processes) via ssh"""
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hosts = []
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thread_list = []
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server_count_per_machine = 0
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# Get the IP addresses of the cluster.
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# ip_config = os.path.join(args.workspace, args.ip_config)
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ip_config = args.ip_config
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with open(ip_config) as f:
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for line in f:
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result = line.strip().split()
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if len(result) == 2:
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ip = result[0]
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port = int(result[1])
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hosts.append((ip, port))
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elif len(result) == 1:
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ip = result[0]
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port = DEFAULT_PORT
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hosts.append((ip, port))
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else:
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raise RuntimeError("Format error of ip_config.")
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server_count_per_machine = args.num_proc_per_machine
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# launch server tasks
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server_env_vars = construct_dgl_server_env_vars(
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ip_config=args.ip_config,
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num_proc_per_machine=args.num_proc_per_machine,
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pythonpath=os.environ.get("PYTHONPATH", ""),
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)
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for i in range(len(hosts) * server_count_per_machine):
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ip, _ = hosts[int(i / server_count_per_machine)]
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server_env_vars_cur = f"{server_env_vars} RANK={i} MASTER_ADDR={hosts[0][0]} MASTER_PORT={args.master_port}"
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cmd = wrap_cmd_with_local_envvars(udf_command, server_env_vars_cur)
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print(cmd)
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thread_list.append(
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execute_remote(cmd, ip, args.ssh_port, username=args.ssh_username)
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)
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# Start a cleanup process dedicated for cleaning up remote training jobs.
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conn1, conn2 = multiprocessing.Pipe()
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func = partial(get_all_remote_pids, hosts, args.ssh_port, udf_command)
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process = multiprocessing.Process(target=cleanup_proc, args=(func, conn1))
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process.start()
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def signal_handler(signal, frame):
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logging.info("Stop launcher")
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# We need to tell the cleanup process to kill remote training jobs.
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conn2.send("cleanup")
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sys.exit(0)
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signal.signal(signal.SIGINT, signal_handler)
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for thread in thread_list:
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thread.join()
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# The training processes complete. We should tell the cleanup process to exit.
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conn2.send("exit")
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process.join()
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def main():
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parser = argparse.ArgumentParser(description="Launch a distributed job")
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parser.add_argument("--ssh_port", type=int, default=22, help="SSH Port.")
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parser.add_argument(
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"--ssh_username",
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default="",
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help="Optional. When issuing commands (via ssh) to cluster, use the provided username in the ssh cmd. "
|
||||
"Example: If you provide --ssh_username=bob, then the ssh command will be like: 'ssh bob@1.2.3.4 CMD' "
|
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"instead of 'ssh 1.2.3.4 CMD'",
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)
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parser.add_argument(
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"--num_proc_per_machine",
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type=int,
|
||||
help="The number of server processes per machine",
|
||||
)
|
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parser.add_argument(
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"--master_port",
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||||
type=int,
|
||||
help="This port is used to form gloo group (randevouz server)",
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||||
)
|
||||
parser.add_argument(
|
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"--ip_config",
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||||
type=str,
|
||||
help="The file (in workspace) of IP configuration for server processes",
|
||||
)
|
||||
|
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args, udf_command = parser.parse_known_args()
|
||||
assert len(udf_command) == 1, "Please provide user command line."
|
||||
assert (
|
||||
args.num_proc_per_machine is not None and args.num_proc_per_machine > 0
|
||||
), "--num_proc_per_machine must be a positive number."
|
||||
assert (
|
||||
args.ip_config is not None
|
||||
), "A user has to specify an IP configuration file with --ip_config."
|
||||
|
||||
udf_command = str(udf_command[0])
|
||||
if "python" not in udf_command:
|
||||
raise RuntimeError(
|
||||
"DGL launching script can only support Python executable file."
|
||||
)
|
||||
|
||||
submit_jobs(args, udf_command)
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
fmt = "%(asctime)s %(levelname)s %(message)s"
|
||||
logging.basicConfig(format=fmt, level=logging.INFO)
|
||||
main()
|
||||
Reference in New Issue
Block a user