wehub-resource-sync
309 lines
11 KiB
Python
309 lines
11 KiB
Python
import matplotlib
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# Set non-interactive backend before importing pyplot to avoid GUI dependencies in CI
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matplotlib.use("Agg")
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import matplotlib.pyplot as plt
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import numpy as np
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import pytest
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import pandas as pd
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from cleanlab import Datalab
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import cleanlab.datalab.internal.adapter.imagelab as imagelab
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LABEL_NAME = "label"
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IMAGE_NAME = "image"
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IMAGELAB_ISSUE_TYPES = [
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"dark",
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"light",
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"low_information",
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"odd_aspect_ratio",
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"odd_size",
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"grayscale",
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"blurry",
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]
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SEED = 42
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class TestCleanvisionIntegration:
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@pytest.fixture
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def features(self, image_dataset):
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np.random.seed(SEED)
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return np.random.rand(len(image_dataset), 5)
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@pytest.fixture
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def num_imagelab_issues(self):
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return 7
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@pytest.fixture
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def num_datalab_issues(self):
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return 6
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@pytest.fixture
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def pred_probs(self, image_dataset):
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np.random.seed(SEED)
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return np.random.rand(len(image_dataset), 2)
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@pytest.fixture
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def set_plt_show(self, monkeypatch):
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monkeypatch.setattr(plt, "show", lambda: None)
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@pytest.mark.usefixtures("set_plt_show")
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def test_imagelab_issues_checked(
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self, image_dataset, pred_probs, features, capsys, num_imagelab_issues, num_datalab_issues
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):
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datalab = Datalab(data=image_dataset, label_name=LABEL_NAME, image_key=IMAGE_NAME)
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datalab.find_issues(pred_probs=pred_probs, features=features)
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captured = capsys.readouterr()
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assert (
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"Finding dark, light, low_information, odd_aspect_ratio, odd_size, grayscale, blurry images"
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in captured.out
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)
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# unable to check for non iid as feature space is too small, skipping it in interest of time
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assert "Failed to check for these issue types: [NonIIDIssueManager]" in captured.out
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assert len(datalab.issues) == len(image_dataset)
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# add up imagelab + datalab issues
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assert len(datalab.issues.columns) == (num_imagelab_issues + num_datalab_issues) * 2
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assert len(datalab.issue_summary) == num_imagelab_issues + num_datalab_issues
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all_keys = IMAGELAB_ISSUE_TYPES + [
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"statistics",
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"label",
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"outlier",
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"near_duplicate",
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"class_imbalance",
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"null",
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"underperforming_group",
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# "non_iid",
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# Spurious correlations issue type is checked by default on image datasets
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"spurious_correlations",
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]
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assert set(all_keys) == set(datalab.info.keys())
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datalab.report(show_all_issues=True)
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captured = capsys.readouterr()
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for issue_type in IMAGELAB_ISSUE_TYPES:
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assert issue_type in captured.out
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df = pd.DataFrame(
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{
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"issue_type": [
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"dark",
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"light",
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"low_information",
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"odd_aspect_ratio",
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"odd_size",
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"grayscale",
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"blurry",
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"label",
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"outlier",
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"near_duplicate",
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"class_imbalance",
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"null",
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"underperforming_group",
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],
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"num_issues": [1, 1, 0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0],
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}
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)
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expected_count = df.sort_values(by="issue_type")["num_issues"].tolist()
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count = datalab.issue_summary.sort_values(by="issue_type")["num_issues"].tolist()
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assert set(datalab.issue_summary["issue_type"].tolist()) == set(df["issue_type"].tolist())
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assert count == expected_count
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assert datalab.issue_summary["num_issues"].sum() == df["num_issues"].sum()
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@pytest.mark.usefixtures("set_plt_show")
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def test_imagelab_max_prevalence(
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self,
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image_dataset,
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pred_probs,
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features,
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capsys,
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num_datalab_issues,
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monkeypatch,
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):
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max_prevalence = 0
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monkeypatch.setattr(imagelab, "IMAGELAB_ISSUES_MAX_PREVALENCE", max_prevalence)
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datalab = Datalab(data=image_dataset, label_name=LABEL_NAME, image_key=IMAGE_NAME)
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datalab.find_issues(pred_probs=pred_probs, features=features)
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captured = capsys.readouterr()
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assert (
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"Finding dark, light, low_information, odd_aspect_ratio, odd_size, grayscale, blurry images"
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in captured.out
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)
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assert (
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f"from potential issues in the dataset as it exceeds max_prevalence={max_prevalence}"
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in captured.out
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)
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issue_summary = datalab.get_issue_summary()
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assert (
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len(issue_summary) == 1 + num_datalab_issues
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) # adding 1 as no low_information issues present
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def test_imagelab_issues_not_checked(
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self, image_dataset, pred_probs, features, capsys, num_datalab_issues
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):
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datalab = Datalab(data=image_dataset, label_name=LABEL_NAME)
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datalab.find_issues(pred_probs=pred_probs, features=features)
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captured = capsys.readouterr()
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assert (
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"Finding dark, light, low_information, odd_aspect_ratio, odd_size, grayscale, blurry images"
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not in captured.out
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)
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assert len(datalab.issues) == len(image_dataset)
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assert len(datalab.issues.columns) == num_datalab_issues * 2
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assert len(datalab.issue_summary) == num_datalab_issues
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all_keys = [
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"statistics",
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"label",
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"outlier",
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"near_duplicate",
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"class_imbalance",
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"null",
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"underperforming_group",
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]
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assert set(all_keys) == set(datalab.info.keys())
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datalab.report(show_all_issues=True)
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captured = capsys.readouterr()
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for issue_type in IMAGELAB_ISSUE_TYPES:
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assert issue_type not in captured.out
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@pytest.mark.usefixtures("set_plt_show")
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def test_incremental_issue_check(self, image_dataset, pred_probs, features, capsys):
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datalab = Datalab(data=image_dataset, label_name=LABEL_NAME, image_key=IMAGE_NAME)
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datalab.find_issues(pred_probs=pred_probs, features=features, issue_types={"label": {}})
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assert len(datalab.issues) == len(image_dataset)
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assert len(datalab.issues.columns) == 2
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assert len(datalab.issue_summary) == 1
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all_keys = ["statistics", "label"]
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assert set(all_keys) == set(datalab.info.keys())
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datalab.report(show_all_issues=True)
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captured = capsys.readouterr()
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assert "label" in captured.out
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datalab.find_issues(issue_types={"image_issue_types": {"dark": {}}})
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assert len(datalab.issues) == len(image_dataset)
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assert len(datalab.issues.columns) == 4
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assert len(datalab.issue_summary) == 2
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all_keys = ["statistics", "label", "dark"]
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assert set(all_keys) == set(datalab.info.keys())
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datalab.report(show_all_issues=True)
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captured = capsys.readouterr()
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assert "label" in captured.out
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assert "dark" in captured.out
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with pytest.warns() as record:
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datalab.find_issues(
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issue_types={"image_issue_types": {"dark": {"threshold": 0.5}, "light": {}}}
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)
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assert len(record) == 3
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assert (
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"Overwriting columns ['is_dark_issue', 'dark_score'] in self.issues with columns from imagelab."
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== record[0].message.args[0]
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)
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assert (
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"Overwriting ['dark'] rows in self.issue_summary from imagelab."
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== record[1].message.args[0]
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)
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assert "Overwriting key dark in self.info" == record[2].message.args[0]
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assert len(datalab.issues) == len(image_dataset)
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assert len(datalab.issues.columns) == 6
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assert len(datalab.issue_summary) == 3
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all_keys = ["statistics", "label", "dark", "light"]
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assert set(all_keys) == set(datalab.info.keys())
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datalab.report(show_all_issues=True)
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captured = capsys.readouterr()
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assert "label" in captured.out
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assert "dark" in captured.out
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@pytest.mark.usefixtures("set_plt_show")
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def test_labels_not_required_for_imagelab_issues(
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self, image_dataset, features, capsys, num_imagelab_issues
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):
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datalab = Datalab(data=image_dataset, image_key=IMAGE_NAME)
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datalab.find_issues()
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captured = capsys.readouterr()
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assert (
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"Finding dark, light, low_information, odd_aspect_ratio, odd_size, grayscale, blurry images"
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in captured.out
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)
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assert len(datalab.issues) == len(image_dataset)
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assert len(datalab.issues.columns) == num_imagelab_issues * 2
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assert len(datalab.issue_summary) == num_imagelab_issues
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all_keys = IMAGELAB_ISSUE_TYPES + ["statistics"]
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assert set(all_keys) == set(datalab.info.keys())
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datalab.report(show_all_issues=True)
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captured = capsys.readouterr()
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for issue_type in IMAGELAB_ISSUE_TYPES:
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assert issue_type in captured.out
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@pytest.fixture
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def lab(self, image_dataset):
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lab = Datalab(data=image_dataset, label_name=LABEL_NAME, image_key=IMAGE_NAME)
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lab.find_issues()
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return lab
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def test_get_summary(self, lab):
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summary = lab.get_issue_summary("dark")
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assert len(summary) == 1
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num_issues = summary["num_issues"].values[0]
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assert num_issues == 1
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@pytest.mark.parametrize(
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"list_method", ["list_possible_issue_types", "list_default_issue_types"]
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)
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def test_list_issue_type_method(self, image_dataset, lab, list_method):
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method = getattr(lab, list_method)
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issue_types = method()
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# Check that Datalab without Imagelab injected has just a subset of possible/default issue types
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minimal_lab = Datalab(data=image_dataset)
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minimal_method = getattr(minimal_lab, list_method)
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datalab_issue_types = minimal_method()
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assert set(datalab_issue_types).issubset(set(issue_types))
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# The additional issue types found by method should be the same as IMAGELAB_ISSUE_TYPES
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assert set(issue_types).difference(datalab_issue_types) == set(IMAGELAB_ISSUE_TYPES)
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@pytest.mark.issue1027
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def test_get_issues(self, lab):
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"""
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Test the `get_issues` method of the `lab` object.
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This method checks if the columns returned by the `get_issues` method
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match the expected columns for each issue type defined in `IMAGELAB_ISSUE_TYPES`.
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Raises:
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AssertionError: If the columns returned by `get_issues` do not match the expected columns.
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"""
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test_condition = lambda s: set(lab.get_issues(s).columns) == set(
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[f"{s}_score", f"is_{s}_issue"]
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)
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failed_assertions = [
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issue_type for issue_type in IMAGELAB_ISSUE_TYPES if not test_condition(issue_type)
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]
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assert (
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len(failed_assertions) == 0
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), f"Tests for `get_issues` with these `issue_types` failed: {failed_assertions}"
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