0ef5fcb1c5
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635 lines
24 KiB
Python
635 lines
24 KiB
Python
"""In-memory graph store for Headroom's knowledge graph memory system.
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Provides thread-safe in-memory storage for entities and relationships
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with efficient lookup via multiple indexes and BFS-based traversal.
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"""
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from __future__ import annotations
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from collections import deque
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from threading import RLock
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from typing import TYPE_CHECKING
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from .graph_models import Entity, Relationship, RelationshipDirection, Subgraph
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if TYPE_CHECKING:
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from ..tracker import ComponentStats
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class InMemoryGraphStore:
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"""Thread-safe in-memory graph store implementing the GraphStore protocol.
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Provides storage for entities and relationships with efficient lookup
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via multiple indexes. All operations are thread-safe using RLock.
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Features:
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- O(1) entity and relationship lookup by ID
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- O(1) entity lookup by name (per user, case-insensitive)
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- O(1) lookup of relationships by source or target entity
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- BFS-based subgraph traversal with configurable hop limit
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- BFS-based shortest path finding between entities
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Indexes:
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- _entities: dict[str, Entity] - entity_id -> Entity
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- _relationships: dict[str, Relationship] - relationship_id -> Relationship
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- _entities_by_user: dict[str, set[str]] - user_id -> entity_ids
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- _entities_by_name: dict[str, dict[str, str]] - user_id -> {name_lower: entity_id}
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- _relationships_by_source: dict[str, set[str]] - entity_id -> relationship_ids (outgoing)
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- _relationships_by_target: dict[str, set[str]] - entity_id -> relationship_ids (incoming)
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Usage:
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store = InMemoryGraphStore()
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await store.add_entity(Entity(user_id="alice", name="Project X", entity_type="project"))
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entity = await store.get_entity_by_name("alice", "project x") # Case-insensitive
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subgraph = await store.query_subgraph(["entity-id"], max_hops=2)
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"""
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def __init__(self) -> None:
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"""Initialize the in-memory graph store with empty indexes."""
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# Primary storage
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self._entities: dict[str, Entity] = {}
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self._relationships: dict[str, Relationship] = {}
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# Secondary indexes for efficient lookup
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self._entities_by_user: dict[str, set[str]] = {}
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self._entities_by_name: dict[str, dict[str, str]] = {} # user_id -> {name_lower: entity_id}
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self._relationships_by_source: dict[str, set[str]] = {} # entity_id -> relationship_ids
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self._relationships_by_target: dict[str, set[str]] = {} # entity_id -> relationship_ids
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# Thread safety - use RLock to allow re-entrant locking
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self._lock = RLock()
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# =========================================================================
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# Entity Operations
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# =========================================================================
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async def add_entity(self, entity: Entity) -> None:
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"""Add an entity to the graph store.
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If an entity with the same ID already exists, it will be replaced
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and indexes will be updated accordingly.
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Args:
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entity: The entity to add.
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"""
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with self._lock:
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# If entity already exists, remove from old indexes first
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if entity.id in self._entities:
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old_entity = self._entities[entity.id]
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self._remove_entity_from_indexes(old_entity)
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# Store the entity
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self._entities[entity.id] = entity
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# Update user index
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if entity.user_id not in self._entities_by_user:
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self._entities_by_user[entity.user_id] = set()
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self._entities_by_user[entity.user_id].add(entity.id)
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# Update name index (case-insensitive)
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if entity.user_id not in self._entities_by_name:
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self._entities_by_name[entity.user_id] = {}
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name_lower = entity.name.lower()
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self._entities_by_name[entity.user_id][name_lower] = entity.id
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async def get_entity(self, entity_id: str) -> Entity | None:
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"""Retrieve an entity by ID.
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Args:
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entity_id: The unique identifier of the entity.
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Returns:
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The entity if found, None otherwise.
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"""
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with self._lock:
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return self._entities.get(entity_id)
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async def get_entity_by_name(self, user_id: str, name: str) -> Entity | None:
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"""Retrieve an entity by name (case-insensitive).
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Args:
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user_id: The user who owns the entity.
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name: The name of the entity (case-insensitive).
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Returns:
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The entity if found, None otherwise.
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"""
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with self._lock:
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user_names = self._entities_by_name.get(user_id)
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if user_names is None:
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return None
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entity_id = user_names.get(name.lower())
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if entity_id is None:
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return None
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return self._entities.get(entity_id)
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async def delete_entity(self, entity_id: str) -> bool:
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"""Delete an entity and all its relationships.
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Removes the entity from storage and all indexes, and deletes
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all relationships where this entity is source or target.
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Args:
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entity_id: The unique identifier of the entity.
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Returns:
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True if the entity was deleted, False if not found.
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"""
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with self._lock:
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entity = self._entities.get(entity_id)
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if entity is None:
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return False
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# Collect all relationships to delete
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relationships_to_delete: set[str] = set()
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# Outgoing relationships
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outgoing = self._relationships_by_source.get(entity_id, set())
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relationships_to_delete.update(outgoing)
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# Incoming relationships
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incoming = self._relationships_by_target.get(entity_id, set())
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relationships_to_delete.update(incoming)
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# Delete relationships
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for rel_id in relationships_to_delete:
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self._remove_relationship_internal(rel_id)
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# Remove entity from indexes
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self._remove_entity_from_indexes(entity)
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# Remove from primary storage
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del self._entities[entity_id]
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return True
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def _remove_entity_from_indexes(self, entity: Entity) -> None:
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"""Remove an entity from secondary indexes (internal, must hold lock)."""
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# Remove from user index
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user_entities = self._entities_by_user.get(entity.user_id)
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if user_entities is not None:
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user_entities.discard(entity.id)
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if not user_entities:
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del self._entities_by_user[entity.user_id]
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# Remove from name index
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user_names = self._entities_by_name.get(entity.user_id)
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if user_names is not None:
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name_lower = entity.name.lower()
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if user_names.get(name_lower) == entity.id:
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del user_names[name_lower]
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if not user_names:
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del self._entities_by_name[entity.user_id]
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# =========================================================================
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# Relationship Operations
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# =========================================================================
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async def add_relationship(self, relationship: Relationship) -> None:
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"""Add a relationship to the graph store.
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If a relationship with the same ID already exists, it will be replaced
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and indexes will be updated accordingly.
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Args:
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relationship: The relationship to add.
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"""
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with self._lock:
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# If relationship already exists, remove from old indexes first
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if relationship.id in self._relationships:
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old_rel = self._relationships[relationship.id]
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self._remove_relationship_from_indexes(old_rel)
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# Store the relationship
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self._relationships[relationship.id] = relationship
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# Update source index
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if relationship.source_id not in self._relationships_by_source:
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self._relationships_by_source[relationship.source_id] = set()
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self._relationships_by_source[relationship.source_id].add(relationship.id)
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# Update target index
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if relationship.target_id not in self._relationships_by_target:
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self._relationships_by_target[relationship.target_id] = set()
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self._relationships_by_target[relationship.target_id].add(relationship.id)
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async def get_relationships(
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self,
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entity_id: str,
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direction: RelationshipDirection = RelationshipDirection.BOTH,
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relation_type: str | None = None,
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) -> list[Relationship]:
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"""Get relationships for an entity.
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Args:
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entity_id: The entity ID to get relationships for.
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direction: Whether to get outgoing, incoming, or both relationships.
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relation_type: Optional filter for relationship type.
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Returns:
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List of matching relationships.
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"""
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with self._lock:
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rel_ids: set[str] = set()
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if direction in (RelationshipDirection.OUTGOING, RelationshipDirection.BOTH):
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rel_ids.update(self._relationships_by_source.get(entity_id, set()))
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if direction in (RelationshipDirection.INCOMING, RelationshipDirection.BOTH):
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rel_ids.update(self._relationships_by_target.get(entity_id, set()))
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relationships = []
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for rel_id in rel_ids:
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rel = self._relationships.get(rel_id)
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if rel is not None:
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if relation_type is None or rel.relation_type == relation_type:
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relationships.append(rel)
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return relationships
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async def delete_relationship(self, relationship_id: str) -> bool:
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"""Delete a single relationship.
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Args:
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relationship_id: The unique identifier of the relationship.
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Returns:
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True if the relationship was deleted, False if not found.
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"""
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with self._lock:
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return self._remove_relationship_internal(relationship_id)
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def _remove_relationship_internal(self, relationship_id: str) -> bool:
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"""Remove a relationship (internal, must hold lock).
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Returns:
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True if removed, False if not found.
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"""
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rel = self._relationships.get(relationship_id)
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if rel is None:
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return False
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# Remove from indexes
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self._remove_relationship_from_indexes(rel)
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# Remove from primary storage
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del self._relationships[relationship_id]
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return True
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def _remove_relationship_from_indexes(self, relationship: Relationship) -> None:
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"""Remove a relationship from secondary indexes (internal, must hold lock)."""
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# Remove from source index
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source_rels = self._relationships_by_source.get(relationship.source_id)
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if source_rels is not None:
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source_rels.discard(relationship.id)
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if not source_rels:
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del self._relationships_by_source[relationship.source_id]
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# Remove from target index
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target_rels = self._relationships_by_target.get(relationship.target_id)
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if target_rels is not None:
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target_rels.discard(relationship.id)
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if not target_rels:
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del self._relationships_by_target[relationship.target_id]
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# =========================================================================
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# Graph Traversal Operations
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# =========================================================================
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async def query_subgraph(
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self,
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entity_ids: list[str],
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max_hops: int = 2,
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direction: RelationshipDirection = RelationshipDirection.BOTH,
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relation_types: list[str] | None = None,
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) -> Subgraph:
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"""Query a subgraph starting from given entities using BFS traversal.
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Performs a breadth-first traversal from the starting entities,
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collecting all entities and relationships within the specified
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number of hops.
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Args:
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entity_ids: Starting entity IDs for the traversal.
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max_hops: Maximum number of hops from starting entities (default 2).
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direction: Direction of relationship traversal.
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relation_types: Optional filter for relationship types.
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Returns:
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Subgraph containing all reachable entities and relationships.
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"""
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with self._lock:
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collected_entities: dict[str, Entity] = {}
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collected_relationships: dict[str, Relationship] = {}
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# BFS queue: (entity_id, current_depth)
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queue: deque[tuple[str, int]] = deque()
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visited: set[str] = set()
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# Initialize queue with starting entities
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for entity_id in entity_ids:
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if entity_id in self._entities:
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queue.append((entity_id, 0))
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visited.add(entity_id)
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collected_entities[entity_id] = self._entities[entity_id]
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# BFS traversal
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while queue:
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current_id, depth = queue.popleft()
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if depth >= max_hops:
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continue
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# Get relationships based on direction
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rel_ids: set[str] = set()
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if direction in (RelationshipDirection.OUTGOING, RelationshipDirection.BOTH):
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rel_ids.update(self._relationships_by_source.get(current_id, set()))
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if direction in (RelationshipDirection.INCOMING, RelationshipDirection.BOTH):
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rel_ids.update(self._relationships_by_target.get(current_id, set()))
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# Process relationships
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for rel_id in rel_ids:
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rel = self._relationships.get(rel_id)
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if rel is None:
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continue
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# Filter by relation type if specified
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if relation_types is not None and rel.relation_type not in relation_types:
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continue
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# Add relationship
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collected_relationships[rel_id] = rel
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# Determine neighbor based on direction
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neighbor_id = None
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if direction == RelationshipDirection.OUTGOING:
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if rel.source_id == current_id:
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neighbor_id = rel.target_id
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elif direction == RelationshipDirection.INCOMING:
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if rel.target_id == current_id:
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neighbor_id = rel.source_id
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else: # BOTH
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if rel.source_id == current_id:
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neighbor_id = rel.target_id
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elif rel.target_id == current_id:
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neighbor_id = rel.source_id
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if neighbor_id is not None and neighbor_id not in visited:
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neighbor = self._entities.get(neighbor_id)
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if neighbor is not None:
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visited.add(neighbor_id)
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collected_entities[neighbor_id] = neighbor
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queue.append((neighbor_id, depth + 1))
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|
return Subgraph(
|
|
entities=list(collected_entities.values()),
|
|
relationships=list(collected_relationships.values()),
|
|
root_entity_ids=entity_ids,
|
|
)
|
|
|
|
async def find_path(
|
|
self,
|
|
source_id: str,
|
|
target_id: str,
|
|
max_depth: int = 10,
|
|
direction: RelationshipDirection = RelationshipDirection.BOTH,
|
|
) -> list[str] | None:
|
|
"""Find the shortest path between two entities using BFS.
|
|
|
|
Args:
|
|
source_id: Starting entity ID.
|
|
target_id: Target entity ID.
|
|
max_depth: Maximum path length to search (default 10).
|
|
direction: Direction of relationship traversal.
|
|
|
|
Returns:
|
|
List of entity IDs representing the path (including source and target),
|
|
or None if no path exists within max_depth.
|
|
"""
|
|
with self._lock:
|
|
# Edge cases
|
|
if source_id == target_id:
|
|
return [source_id] if source_id in self._entities else None
|
|
|
|
if source_id not in self._entities or target_id not in self._entities:
|
|
return None
|
|
|
|
# BFS with path tracking
|
|
# Queue: (current_entity_id, path_so_far)
|
|
queue: deque[tuple[str, list[str]]] = deque()
|
|
visited: set[str] = set()
|
|
|
|
queue.append((source_id, [source_id]))
|
|
visited.add(source_id)
|
|
|
|
while queue:
|
|
current_id, path = queue.popleft()
|
|
|
|
if len(path) > max_depth:
|
|
continue
|
|
|
|
# Get neighbors
|
|
rel_ids: set[str] = set()
|
|
|
|
if direction in (RelationshipDirection.OUTGOING, RelationshipDirection.BOTH):
|
|
rel_ids.update(self._relationships_by_source.get(current_id, set()))
|
|
|
|
if direction in (RelationshipDirection.INCOMING, RelationshipDirection.BOTH):
|
|
rel_ids.update(self._relationships_by_target.get(current_id, set()))
|
|
|
|
for rel_id in rel_ids:
|
|
rel = self._relationships.get(rel_id)
|
|
if rel is None:
|
|
continue
|
|
|
|
# Determine neighbor based on direction
|
|
neighbor_id = None
|
|
if direction == RelationshipDirection.OUTGOING:
|
|
if rel.source_id == current_id:
|
|
neighbor_id = rel.target_id
|
|
elif direction == RelationshipDirection.INCOMING:
|
|
if rel.target_id == current_id:
|
|
neighbor_id = rel.source_id
|
|
else: # BOTH
|
|
if rel.source_id == current_id:
|
|
neighbor_id = rel.target_id
|
|
elif rel.target_id == current_id:
|
|
neighbor_id = rel.source_id
|
|
|
|
if neighbor_id is None or neighbor_id in visited:
|
|
continue
|
|
|
|
# Check if we found the target
|
|
new_path = path + [neighbor_id]
|
|
if neighbor_id == target_id:
|
|
return new_path
|
|
|
|
# Continue BFS if within depth limit
|
|
if len(new_path) <= max_depth:
|
|
visited.add(neighbor_id)
|
|
queue.append((neighbor_id, new_path))
|
|
|
|
return None
|
|
|
|
# =========================================================================
|
|
# User Management Operations
|
|
# =========================================================================
|
|
|
|
async def clear_user(self, user_id: str) -> tuple[int, int]:
|
|
"""Clear all entities and relationships for a user.
|
|
|
|
Args:
|
|
user_id: The user ID to clear data for.
|
|
|
|
Returns:
|
|
Tuple of (entities_deleted, relationships_deleted).
|
|
"""
|
|
with self._lock:
|
|
entities_deleted = 0
|
|
relationships_deleted = 0
|
|
|
|
# Get all entity IDs for this user
|
|
entity_ids = list(self._entities_by_user.get(user_id, set()))
|
|
|
|
# Delete each entity (which also deletes its relationships)
|
|
for entity_id in entity_ids:
|
|
entity = self._entities.get(entity_id)
|
|
if entity is None:
|
|
continue
|
|
|
|
# Count and delete relationships
|
|
outgoing = self._relationships_by_source.get(entity_id, set())
|
|
incoming = self._relationships_by_target.get(entity_id, set())
|
|
rel_ids_to_delete = outgoing | incoming
|
|
|
|
for rel_id in list(rel_ids_to_delete):
|
|
if self._remove_relationship_internal(rel_id):
|
|
relationships_deleted += 1
|
|
|
|
# Remove entity from indexes
|
|
self._remove_entity_from_indexes(entity)
|
|
|
|
# Remove from primary storage
|
|
del self._entities[entity_id]
|
|
entities_deleted += 1
|
|
|
|
return entities_deleted, relationships_deleted
|
|
|
|
# =========================================================================
|
|
# Utility Methods
|
|
# =========================================================================
|
|
|
|
async def get_entities_for_user(self, user_id: str) -> list[Entity]:
|
|
"""Get all entities for a user.
|
|
|
|
Args:
|
|
user_id: The user ID to get entities for.
|
|
|
|
Returns:
|
|
List of all entities belonging to the user.
|
|
"""
|
|
with self._lock:
|
|
entity_ids = self._entities_by_user.get(user_id, set())
|
|
return [self._entities[eid] for eid in entity_ids if eid in self._entities]
|
|
|
|
async def clear(self) -> None:
|
|
"""Clear all data from the store."""
|
|
with self._lock:
|
|
self._entities.clear()
|
|
self._relationships.clear()
|
|
self._entities_by_user.clear()
|
|
self._entities_by_name.clear()
|
|
self._relationships_by_source.clear()
|
|
self._relationships_by_target.clear()
|
|
|
|
@property
|
|
def entity_count(self) -> int:
|
|
"""Get the total number of entities."""
|
|
with self._lock:
|
|
return len(self._entities)
|
|
|
|
@property
|
|
def relationship_count(self) -> int:
|
|
"""Get the total number of relationships."""
|
|
with self._lock:
|
|
return len(self._relationships)
|
|
|
|
def stats(self) -> dict:
|
|
"""Get store statistics.
|
|
|
|
Returns:
|
|
Dict with counts and index sizes.
|
|
"""
|
|
with self._lock:
|
|
return {
|
|
"entity_count": len(self._entities),
|
|
"relationship_count": len(self._relationships),
|
|
"users_count": len(self._entities_by_user),
|
|
"source_index_size": len(self._relationships_by_source),
|
|
"target_index_size": len(self._relationships_by_target),
|
|
}
|
|
|
|
def get_memory_stats(self) -> ComponentStats:
|
|
"""Get memory statistics for the MemoryTracker.
|
|
|
|
Returns:
|
|
ComponentStats with current memory usage.
|
|
"""
|
|
import sys
|
|
|
|
from ..tracker import ComponentStats
|
|
|
|
with self._lock:
|
|
# Calculate size of all data structures
|
|
size_bytes = 0
|
|
|
|
# Entities
|
|
size_bytes += sys.getsizeof(self._entities)
|
|
for entity_id, entity in self._entities.items():
|
|
size_bytes += len(entity_id)
|
|
size_bytes += sys.getsizeof(entity)
|
|
size_bytes += len(entity.id) + len(entity.user_id) + len(entity.name)
|
|
size_bytes += len(entity.entity_type)
|
|
if entity.properties:
|
|
size_bytes += sys.getsizeof(entity.properties)
|
|
|
|
# Relationships
|
|
size_bytes += sys.getsizeof(self._relationships)
|
|
for rel_id, rel in self._relationships.items():
|
|
size_bytes += len(rel_id)
|
|
size_bytes += sys.getsizeof(rel)
|
|
size_bytes += len(rel.id) + len(rel.source_id) + len(rel.target_id)
|
|
size_bytes += len(rel.relation_type)
|
|
if rel.properties:
|
|
size_bytes += sys.getsizeof(rel.properties)
|
|
|
|
# Indexes
|
|
size_bytes += sys.getsizeof(self._entities_by_user)
|
|
for user_id, entity_ids in self._entities_by_user.items():
|
|
size_bytes += len(user_id)
|
|
size_bytes += sys.getsizeof(entity_ids)
|
|
|
|
size_bytes += sys.getsizeof(self._entities_by_name)
|
|
for user_id, name_map in self._entities_by_name.items():
|
|
size_bytes += len(user_id)
|
|
size_bytes += sys.getsizeof(name_map)
|
|
|
|
size_bytes += sys.getsizeof(self._relationships_by_source)
|
|
size_bytes += sys.getsizeof(self._relationships_by_target)
|
|
|
|
entry_count = len(self._entities) + len(self._relationships)
|
|
|
|
return ComponentStats(
|
|
name="graph_store",
|
|
entry_count=entry_count,
|
|
size_bytes=size_bytes,
|
|
budget_bytes=None,
|
|
hits=0,
|
|
misses=0,
|
|
evictions=0,
|
|
)
|