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This commit is contained in:
wehub-resource-sync
2026-07-13 13:28:29 +08:00
commit fed8b2eed7
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import logging
import os
from abc import ABC, abstractmethod
import requests
from langchain_openai import OpenAIEmbeddings
from application.core.settings import settings
from application.utils import get_encoding
class RemoteEmbeddings:
"""
Wrapper for remote embeddings API (OpenAI-compatible).
Used when EMBEDDINGS_BASE_URL is configured.
Sends requests to {base_url}/v1/embeddings in OpenAI format.
"""
def __init__(self, api_url: str, model_name: str, api_key: str = None):
self.api_url = api_url.rstrip("/")
self.model_name = model_name
self.headers = {"Content-Type": "application/json"}
if api_key:
self.headers["Authorization"] = f"Bearer {api_key}"
self.dimension = 768
def _truncate_inputs(self, inputs):
"""Clip each input to ``EMBEDDINGS_MAX_INPUT_TOKENS`` tokens.
The remote server (e.g. llama.cpp) hard-rejects any single input
larger than its physical batch size with a 500. When the setting is
configured, each input is truncated to that many tokens before the
request and the overflow is dropped (lossy by design). Token counts
use the shared tiktoken encoding, which differs from the server's
tokenizer, so set the limit with headroom under the server's true
limit to absorb tokenizer skew.
Args:
inputs: A single string or a list of strings to embed.
Returns:
The inputs with each string clipped to the token limit, or the
inputs unchanged when the limit is unset or non-positive.
"""
limit = settings.EMBEDDINGS_MAX_INPUT_TOKENS
if not limit or limit <= 0:
return inputs
encoding = get_encoding()
def clip(text):
if not isinstance(text, str):
return text
tokens = encoding.encode(text)
if len(tokens) <= limit:
return text
logging.warning(
"Truncating remote embeddings input from %d to %d tokens (%d dropped)",
len(tokens),
limit,
len(tokens) - limit,
)
return encoding.decode(tokens[:limit])
if isinstance(inputs, list):
return [clip(text) for text in inputs]
return clip(inputs)
def _embed(self, inputs):
"""Send embedding request to remote API in OpenAI-compatible format."""
inputs = self._truncate_inputs(inputs)
payload = {"input": inputs}
if self.model_name:
payload["model"] = self.model_name
url = f"{self.api_url}/v1/embeddings"
response = requests.post(url, headers=self.headers, json=payload, timeout=180)
response.raise_for_status()
result = response.json()
# Handle OpenAI-compatible response format
if isinstance(result, dict):
if "error" in result:
raise ValueError(f"Remote embeddings API error: {result['error']}")
if "data" in result:
# Sort by index to ensure correct order
data = sorted(result["data"], key=lambda x: x.get("index", 0))
return [item["embedding"] for item in data]
raise ValueError(
f"Unexpected response format from remote embeddings API: {result}"
)
else:
raise ValueError(
f"Unexpected response format from remote embeddings API: {result}"
)
def embed_query(self, query: str):
"""Embed a single query string."""
embeddings_list = self._embed(query)
if (
isinstance(embeddings_list, list)
and len(embeddings_list) == 1
and isinstance(embeddings_list[0], list)
):
if self.dimension is None:
self.dimension = len(embeddings_list[0])
return embeddings_list[0]
raise ValueError(
f"Unexpected result structure after embedding query: {embeddings_list}"
)
def embed_documents(self, documents: list):
"""Embed a list of documents."""
if not documents:
return []
embeddings_list = self._embed(documents)
if self.dimension is None and embeddings_list:
self.dimension = len(embeddings_list[0])
return embeddings_list
def __call__(self, text):
if isinstance(text, str):
return self.embed_query(text)
elif isinstance(text, list):
return self.embed_documents(text)
else:
raise ValueError("Input must be a string or a list of strings")
def _get_embeddings_wrapper():
"""Lazy import of EmbeddingsWrapper to avoid loading SentenceTransformer when using remote embeddings."""
from application.vectorstore.embeddings_local import EmbeddingsWrapper
return EmbeddingsWrapper
class EmbeddingsSingleton:
_instances = {}
@staticmethod
def _remote_instance(embeddings_name, embeddings_key=None):
"""Return a cached ``RemoteEmbeddings`` for the configured remote API.
Centralizes the ``EMBEDDINGS_BASE_URL`` dispatch so every caller —
including code that calls :meth:`get_instance` directly (GraphRAG,
semantic chunking) rather than via
:meth:`BaseVectorStore._get_embeddings` — routes to the remote
embeddings server instead of attempting a local model download.
Args:
embeddings_name: Model name forwarded to the remote API.
embeddings_key: Optional API key; falls back to
``settings.EMBEDDINGS_KEY`` when not provided.
Returns:
RemoteEmbeddings: Shared instance keyed by base URL and model name.
"""
api_key = embeddings_key if embeddings_key is not None else settings.EMBEDDINGS_KEY
cache_key = f"remote_{settings.EMBEDDINGS_BASE_URL}_{embeddings_name}"
if cache_key not in EmbeddingsSingleton._instances:
EmbeddingsSingleton._instances[cache_key] = RemoteEmbeddings(
api_url=settings.EMBEDDINGS_BASE_URL,
model_name=embeddings_name,
api_key=api_key,
)
return EmbeddingsSingleton._instances[cache_key]
@staticmethod
def get_instance(embeddings_name, *args, **kwargs):
if settings.EMBEDDINGS_BASE_URL:
return EmbeddingsSingleton._remote_instance(embeddings_name)
if embeddings_name not in EmbeddingsSingleton._instances:
EmbeddingsSingleton._instances[embeddings_name] = (
EmbeddingsSingleton._create_instance(embeddings_name, *args, **kwargs)
)
return EmbeddingsSingleton._instances[embeddings_name]
@staticmethod
def _create_instance(embeddings_name, *args, **kwargs):
if embeddings_name == "openai_text-embedding-ada-002":
return OpenAIEmbeddings(*args, **kwargs)
# Lazy import EmbeddingsWrapper only when needed (avoids loading SentenceTransformer)
EmbeddingsWrapper = _get_embeddings_wrapper()
embeddings_factory = {
"huggingface_sentence-transformers/all-mpnet-base-v2": lambda: EmbeddingsWrapper(
"sentence-transformers/all-mpnet-base-v2"
),
"huggingface_sentence-transformers-all-mpnet-base-v2": lambda: EmbeddingsWrapper(
"sentence-transformers/all-mpnet-base-v2"
),
"huggingface_hkunlp/instructor-large": lambda: EmbeddingsWrapper(
"hkunlp/instructor-large"
),
}
if embeddings_name in embeddings_factory:
return embeddings_factory[embeddings_name](*args, **kwargs)
else:
return EmbeddingsWrapper(embeddings_name, *args, **kwargs)
class BaseVectorStore(ABC):
def __init__(self):
pass
@abstractmethod
def search(self, *args, **kwargs):
"""Search for similar documents/chunks in the vectorstore"""
pass
def keyword_search(self, question, k=10):
"""Keyword/full-text search.
Default returns no results so hybrid retrieval degrades to vector-only
on stores without keyword support. Override in stores that support it.
"""
return []
@abstractmethod
def add_texts(self, texts, metadatas=None, *args, **kwargs):
"""Add texts with their embeddings to the vectorstore"""
pass
def delete_index(self, *args, **kwargs):
"""Delete the entire index/collection"""
pass
def save_local(self, *args, **kwargs):
"""Save vectorstore to local storage"""
pass
def get_chunks(self, *args, **kwargs):
"""Get all chunks from the vectorstore"""
pass
def add_chunk(self, text, metadata=None, *args, **kwargs):
"""Add a single chunk to the vectorstore"""
pass
def delete_chunk(self, chunk_id, *args, **kwargs):
"""Delete a specific chunk from the vectorstore"""
pass
def delete_chunks_by_source_path(self, path) -> int:
"""Delete every chunk whose ``metadata.source`` equals ``path``.
Default implementation iterates ``get_chunks()`` and deletes the
matches via ``delete_chunk()`` — works for any store. Override with a
single targeted statement where the store supports it. Returns the
number of chunks deleted.
"""
deleted = 0
for chunk in self.get_chunks() or []:
if (chunk.get("metadata") or {}).get("source") == path:
if self.delete_chunk(chunk.get("doc_id")):
deleted += 1
return deleted
def is_azure_configured(self):
return (
settings.OPENAI_API_BASE
and settings.OPENAI_API_VERSION
and settings.AZURE_DEPLOYMENT_NAME
)
def _get_embeddings(self, embeddings_name, embeddings_key=None):
# Check for remote embeddings first
if settings.EMBEDDINGS_BASE_URL:
logging.info(
f"Using remote embeddings API at: {settings.EMBEDDINGS_BASE_URL}"
)
return EmbeddingsSingleton._remote_instance(embeddings_name, embeddings_key)
if embeddings_name == "openai_text-embedding-ada-002":
if self.is_azure_configured():
os.environ["OPENAI_API_TYPE"] = "azure"
embedding_instance = EmbeddingsSingleton.get_instance(
embeddings_name, model=settings.AZURE_EMBEDDINGS_DEPLOYMENT_NAME
)
else:
embedding_instance = EmbeddingsSingleton.get_instance(
embeddings_name, openai_api_key=embeddings_key
)
elif embeddings_name == "huggingface_sentence-transformers/all-mpnet-base-v2":
possible_paths = [
"/app/models/all-mpnet-base-v2", # Docker absolute path
"./models/all-mpnet-base-v2", # Relative path
]
local_model_path = None
for path in possible_paths:
if os.path.exists(path):
local_model_path = path
logging.info(f"Found local model at path: {path}")
break
else:
logging.info(f"Path does not exist: {path}")
if local_model_path:
embedding_instance = EmbeddingsSingleton.get_instance(
local_model_path,
)
else:
logging.warning(
f"Local model not found in any of the paths: {possible_paths}. Falling back to HuggingFace download."
)
embedding_instance = EmbeddingsSingleton.get_instance(
embeddings_name,
)
else:
embedding_instance = EmbeddingsSingleton.get_instance(embeddings_name)
return embedding_instance
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class Document(str):
"""Class for storing a piece of text and associated metadata."""
def __new__(cls, page_content: str, metadata: dict):
instance = super().__new__(cls, page_content)
instance.page_content = page_content
instance.metadata = metadata
return instance
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from application.vectorstore.base import BaseVectorStore
from application.core.settings import settings
from application.vectorstore.document_class import Document
class ElasticsearchStore(BaseVectorStore):
_es_connection = None # Class attribute to hold the Elasticsearch connection
def __init__(self, source_id, embeddings_key, index_name=settings.ELASTIC_INDEX):
super().__init__()
self.source_id = source_id.replace("application/indexes/", "").rstrip("/")
self.embeddings_key = embeddings_key
self.index_name = index_name
if ElasticsearchStore._es_connection is None:
connection_params = {}
if settings.ELASTIC_URL:
connection_params["hosts"] = [settings.ELASTIC_URL]
connection_params["http_auth"] = (settings.ELASTIC_USERNAME, settings.ELASTIC_PASSWORD)
elif settings.ELASTIC_CLOUD_ID:
connection_params["cloud_id"] = settings.ELASTIC_CLOUD_ID
connection_params["basic_auth"] = (settings.ELASTIC_USERNAME, settings.ELASTIC_PASSWORD)
else:
raise ValueError("Please provide either elasticsearch_url or cloud_id.")
import elasticsearch
ElasticsearchStore._es_connection = elasticsearch.Elasticsearch(**connection_params)
self.docsearch = ElasticsearchStore._es_connection
def connect_to_elasticsearch(
*,
es_url = None,
cloud_id = None,
api_key = None,
username = None,
password = None,
):
try:
import elasticsearch
except ImportError:
raise ImportError(
"Could not import elasticsearch python package. "
"Please install it with `pip install elasticsearch`."
)
if es_url and cloud_id:
raise ValueError(
"Both es_url and cloud_id are defined. Please provide only one."
)
connection_params = {}
if es_url:
connection_params["hosts"] = [es_url]
elif cloud_id:
connection_params["cloud_id"] = cloud_id
else:
raise ValueError("Please provide either elasticsearch_url or cloud_id.")
if api_key:
connection_params["api_key"] = api_key
elif username and password:
connection_params["basic_auth"] = (username, password)
es_client = elasticsearch.Elasticsearch(
**connection_params,
)
try:
es_client.info()
except Exception as e:
raise e
return es_client
def search(self, question, k=2, index_name=settings.ELASTIC_INDEX, *args, **kwargs):
embeddings = self._get_embeddings(settings.EMBEDDINGS_NAME, self.embeddings_key)
vector = embeddings.embed_query(question)
knn = {
"filter": [{"match": {"metadata.source_id.keyword": self.source_id}}],
"field": "vector",
"k": k,
"num_candidates": 100,
"query_vector": vector,
}
full_query = {
"knn": knn,
"query": {
"bool": {
"must": [
{
"match": {
"text": {
"query": question,
}
}
}
],
"filter": [{"match": {"metadata.source_id.keyword": self.source_id}}],
}
},
"rank": {"rrf": {}},
}
resp = self.docsearch.search(index=self.index_name, query=full_query['query'], size=k, knn=full_query['knn'])
# create Documents objects from the results page_content ['_source']['text'], metadata ['_source']['metadata']
doc_list = []
for hit in resp['hits']['hits']:
doc_list.append(Document(page_content = hit['_source']['text'], metadata = hit['_source']['metadata']))
return doc_list
def _create_index_if_not_exists(
self, index_name, dims_length
):
if self._es_connection.indices.exists(index=index_name):
print(f"Index {index_name} already exists.")
else:
indexSettings = self.index(
dims_length=dims_length,
)
self._es_connection.indices.create(index=index_name, **indexSettings)
def index(
self,
dims_length,
):
return {
"mappings": {
"properties": {
"vector": {
"type": "dense_vector",
"dims": dims_length,
"index": True,
"similarity": "cosine",
},
}
}
}
def add_texts(
self,
texts,
metadatas = None,
ids = None,
refresh_indices = True,
create_index_if_not_exists = True,
bulk_kwargs = None,
**kwargs,
):
bulk_kwargs = bulk_kwargs or {}
import uuid
embeddings = []
ids = ids or [str(uuid.uuid4()) for _ in texts]
requests = []
embeddings = self._get_embeddings(settings.EMBEDDINGS_NAME, self.embeddings_key)
vectors = embeddings.embed_documents(list(texts))
dims_length = len(vectors[0])
if create_index_if_not_exists:
self._create_index_if_not_exists(
index_name=self.index_name, dims_length=dims_length
)
for i, (text, vector) in enumerate(zip(texts, vectors)):
metadata = metadatas[i] if metadatas else {}
requests.append(
{
"_op_type": "index",
"_index": self.index_name,
"text": text,
"vector": vector,
"metadata": metadata,
"_id": ids[i],
}
)
if len(requests) > 0:
from elasticsearch.helpers import BulkIndexError, bulk
try:
success, failed = bulk(
self._es_connection,
requests,
stats_only=True,
refresh=refresh_indices,
**bulk_kwargs,
)
return ids
except BulkIndexError as e:
print(f"Error adding texts: {e}")
firstError = e.errors[0].get("index", {}).get("error", {})
print(f"First error reason: {firstError.get('reason')}")
raise e
else:
return []
def delete_index(self):
self._es_connection.delete_by_query(index=self.index_name, query={"match": {
"metadata.source_id.keyword": self.source_id}},)
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"""
Local embeddings using SentenceTransformer.
This module is only imported when EMBEDDINGS_BASE_URL is not set,
to avoid loading SentenceTransformer into memory when using remote embeddings.
"""
import logging
from sentence_transformers import SentenceTransformer
class EmbeddingsWrapper:
def __init__(self, model_name, *args, **kwargs):
logging.info(f"Initializing EmbeddingsWrapper with model: {model_name}")
try:
kwargs.setdefault("trust_remote_code", True)
self.model = SentenceTransformer(
model_name,
config_kwargs={"allow_dangerous_deserialization": True},
*args,
**kwargs,
)
if self.model is None or self.model._first_module() is None:
raise ValueError(
f"SentenceTransformer model failed to load properly for: {model_name}"
)
self.dimension = self.model.get_sentence_embedding_dimension()
logging.info(f"Successfully loaded model with dimension: {self.dimension}")
except Exception as e:
logging.error(
f"Failed to initialize SentenceTransformer with model {model_name}: {str(e)}",
exc_info=True,
)
raise
def embed_query(self, query: str):
return self.model.encode(query).tolist()
def embed_documents(self, documents: list):
return self.model.encode(documents).tolist()
def __call__(self, text):
if isinstance(text, str):
return self.embed_query(text)
elif isinstance(text, list):
return self.embed_documents(text)
else:
raise ValueError("Input must be a string or a list of strings")
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import os
import tempfile
import io
from langchain_community.vectorstores import FAISS
from application.core.settings import settings
from application.parser.schema.base import Document
from application.vectorstore.base import BaseVectorStore
from application.storage.storage_creator import StorageCreator
def get_vectorstore(path: str) -> str:
"""Build a safe local path for a FAISS index.
Args:
path: Source identifier provided by the caller.
Returns:
The validated vectorstore path rooted under ``indexes``.
Raises:
ValueError: If ``path`` escapes the ``indexes`` directory.
"""
base_dir = "indexes"
if not path:
return base_dir
normalized = str(path).strip()
if "\\" in normalized:
raise ValueError("Invalid source_id path")
candidate = os.path.normpath(os.path.join(base_dir, normalized))
base_abs = os.path.abspath(base_dir)
candidate_abs = os.path.abspath(candidate)
if not candidate_abs.startswith(base_abs + os.sep) and candidate_abs != base_abs:
raise ValueError("Invalid source_id path")
return candidate
class FaissStore(BaseVectorStore):
def __init__(self, source_id: str, embeddings_key: str, docs_init=None):
super().__init__()
self.source_id = source_id
self.path = get_vectorstore(source_id)
self.embeddings = self._get_embeddings(settings.EMBEDDINGS_NAME, embeddings_key)
self.storage = StorageCreator.get_storage()
try:
if docs_init:
self.docsearch = FAISS.from_documents(docs_init, self.embeddings)
else:
with tempfile.TemporaryDirectory() as temp_dir:
faiss_path = f"{self.path}/index.faiss"
pkl_path = f"{self.path}/index.pkl"
if not self.storage.file_exists(
faiss_path
) or not self.storage.file_exists(pkl_path):
raise FileNotFoundError(
f"Index files not found in storage at {self.path}"
)
faiss_file = self.storage.get_file(faiss_path)
pkl_file = self.storage.get_file(pkl_path)
local_faiss_path = os.path.join(temp_dir, "index.faiss")
local_pkl_path = os.path.join(temp_dir, "index.pkl")
with open(local_faiss_path, "wb") as f:
f.write(faiss_file.read())
with open(local_pkl_path, "wb") as f:
f.write(pkl_file.read())
self.docsearch = FAISS.load_local(
temp_dir, self.embeddings, allow_dangerous_deserialization=True
)
except Exception as e:
raise Exception(f"Error loading FAISS index: {str(e)}")
self.assert_embedding_dimensions(self.embeddings)
def search(self, *args, **kwargs):
# FAISS has no relevance-threshold knob; drop it so the per-source
# score_threshold is safely ignored rather than crashing the forward.
kwargs.pop("score_threshold", None)
return self.docsearch.similarity_search(*args, **kwargs)
def add_texts(self, *args, **kwargs):
return self.docsearch.add_texts(*args, **kwargs)
def _save_to_storage(self):
"""
Save the FAISS index to storage using temporary directory pattern.
Works consistently for both local and S3 storage.
"""
with tempfile.TemporaryDirectory() as temp_dir:
self.docsearch.save_local(temp_dir)
faiss_path = os.path.join(temp_dir, "index.faiss")
pkl_path = os.path.join(temp_dir, "index.pkl")
with open(faiss_path, "rb") as f_faiss:
faiss_data = f_faiss.read()
with open(pkl_path, "rb") as f_pkl:
pkl_data = f_pkl.read()
storage_path = get_vectorstore(self.source_id)
self.storage.save_file(io.BytesIO(faiss_data), f"{storage_path}/index.faiss")
self.storage.save_file(io.BytesIO(pkl_data), f"{storage_path}/index.pkl")
return True
def save_local(self, path=None):
if path:
os.makedirs(path, exist_ok=True)
self.docsearch.save_local(path)
self._save_to_storage()
return True
def delete_index(self, *args, **kwargs):
return self.docsearch.delete(*args, **kwargs)
def assert_embedding_dimensions(self, embeddings):
"""Check that the word embedding dimension of the docsearch index matches the dimension of the word embeddings used."""
if (
settings.EMBEDDINGS_NAME
== "huggingface_sentence-transformers/all-mpnet-base-v2"
):
word_embedding_dimension = getattr(embeddings, "dimension", None)
if word_embedding_dimension is None:
raise AttributeError(
"'dimension' attribute not found in embeddings instance."
)
docsearch_index_dimension = self.docsearch.index.d
if word_embedding_dimension != docsearch_index_dimension:
raise ValueError(
f"Embedding dimension mismatch: embeddings.dimension ({word_embedding_dimension}) != docsearch index dimension ({docsearch_index_dimension})"
)
def get_chunks(self):
chunks = []
if self.docsearch:
for doc_id, doc in self.docsearch.docstore._dict.items():
chunk_data = {
"doc_id": doc_id,
"text": doc.page_content,
"metadata": doc.metadata,
}
chunks.append(chunk_data)
return chunks
def add_chunk(self, text, metadata=None):
"""Add a new chunk and save to storage."""
metadata = metadata or {}
doc = Document(text=text, extra_info=metadata).to_langchain_format()
doc_id = self.docsearch.add_documents([doc])
self._save_to_storage()
return doc_id
def delete_chunk(self, chunk_id):
"""Delete a chunk and save to storage."""
self.delete_index([chunk_id])
self._save_to_storage()
return True
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from typing import List, Optional
import importlib
from application.vectorstore.base import BaseVectorStore
from application.core.settings import settings
class LanceDBVectorStore(BaseVectorStore):
"""Class for LanceDB Vector Store integration."""
def __init__(self, path: str = settings.LANCEDB_PATH,
table_name_prefix: str = settings.LANCEDB_TABLE_NAME,
source_id: str = None,
embeddings_key: str = "embeddings"):
"""Initialize the LanceDB vector store."""
super().__init__()
self.path = path
self.table_name = f"{table_name_prefix}_{source_id}" if source_id else table_name_prefix
self.embeddings_key = embeddings_key
self._lance_db = None
self.docsearch = None
self._pa = None # PyArrow (pa) will be lazy loaded
@property
def pa(self):
"""Lazy load pyarrow module."""
if self._pa is None:
self._pa = importlib.import_module("pyarrow")
return self._pa
@property
def lancedb(self):
"""Lazy load lancedb module."""
if not hasattr(self, "_lancedb_module"):
self._lancedb_module = importlib.import_module("lancedb")
return self._lancedb_module
@property
def lance_db(self):
"""Lazy load the LanceDB connection."""
if self._lance_db is None:
self._lance_db = self.lancedb.connect(self.path)
return self._lance_db
@property
def table(self):
"""Lazy load the LanceDB table."""
if self.docsearch is None:
if self.table_name in self.lance_db.table_names():
self.docsearch = self.lance_db.open_table(self.table_name)
else:
self.docsearch = None
return self.docsearch
def ensure_table_exists(self):
"""Ensure the table exists before performing operations."""
if self.table is None:
embeddings = self._get_embeddings(settings.EMBEDDINGS_NAME, self.embeddings_key)
schema = self.pa.schema([
self.pa.field("vector", self.pa.list_(self.pa.float32(), list_size=embeddings.dimension)),
self.pa.field("text", self.pa.string()),
self.pa.field("metadata", self.pa.struct([
self.pa.field("key", self.pa.string()),
self.pa.field("value", self.pa.string())
]))
])
self.docsearch = self.lance_db.create_table(self.table_name, schema=schema)
def add_texts(self, texts: List[str], metadatas: Optional[List[dict]] = None, source_id: str = None):
"""Add texts with metadata and their embeddings to the LanceDB table."""
embeddings = self._get_embeddings(settings.EMBEDDINGS_NAME, self.embeddings_key).embed_documents(texts)
vectors = []
for embedding, text, metadata in zip(embeddings, texts, metadatas or [{}] * len(texts)):
if source_id:
metadata["source_id"] = source_id
metadata_struct = [{"key": k, "value": str(v)} for k, v in metadata.items()]
vectors.append({
"vector": embedding,
"text": text,
"metadata": metadata_struct
})
self.ensure_table_exists()
self.docsearch.add(vectors)
def search(self, query: str, k: int = 2, *args, **kwargs):
"""Search LanceDB for the top k most similar vectors."""
self.ensure_table_exists()
query_embedding = self._get_embeddings(settings.EMBEDDINGS_NAME, self.embeddings_key).embed_query(query)
results = self.docsearch.search(query_embedding).limit(k).to_list()
return [(result["_distance"], result["text"], result["metadata"]) for result in results]
def delete_index(self):
"""Delete the entire LanceDB index (table)."""
if self.table:
self.lance_db.drop_table(self.table_name)
def assert_embedding_dimensions(self, embeddings):
"""Ensure that embedding dimensions match the table index dimensions."""
word_embedding_dimension = embeddings.dimension
if self.table:
table_index_dimension = len(self.docsearch.schema["vector"].type.value_type)
if word_embedding_dimension != table_index_dimension:
raise ValueError(
f"Embedding dimension mismatch: embeddings.dimension ({word_embedding_dimension}) "
f"!= table index dimension ({table_index_dimension})"
)
def filter_documents(self, filter_condition: dict) -> List[dict]:
"""Filter documents based on certain conditions."""
self.ensure_table_exists()
# Ensure source_id exists in the filter condition
if 'source_id' not in filter_condition:
raise ValueError("filter_condition must contain 'source_id'")
source_id = filter_condition["source_id"]
# Use LanceDB's native filtering if supported, otherwise filter manually
filtered_data = self.docsearch.filter(lambda x: x.metadata and x.metadata.get("source_id") == source_id).to_list()
return filtered_data
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from typing import List, Optional
from uuid import uuid4
from application.core.settings import settings
from application.vectorstore.base import BaseVectorStore
class MilvusStore(BaseVectorStore):
def __init__(self, source_id: str = "", embeddings_key: str = "embeddings"):
super().__init__()
from langchain_milvus import Milvus
connection_args = {
"uri": settings.MILVUS_URI,
"token": settings.MILVUS_TOKEN,
}
self._docsearch = Milvus(
embedding_function=self._get_embeddings(settings.EMBEDDINGS_NAME, embeddings_key),
collection_name=settings.MILVUS_COLLECTION_NAME,
connection_args=connection_args,
)
self._source_id = source_id
def search(self, question, k=2, *args, **kwargs):
# Drop the per-source score_threshold (unsupported here) so it is safely
# ignored instead of being forwarded into the langchain call.
kwargs.pop("score_threshold", None)
expr = f"source_id == '{self._source_id}'"
return self._docsearch.similarity_search(query=question, k=k, expr=expr, *args, **kwargs)
def add_texts(self, texts: List[str], metadatas: Optional[List[dict]], *args, **kwargs):
ids = [str(uuid4()) for _ in range(len(texts))]
return self._docsearch.add_texts(texts=texts, metadatas=metadatas, ids=ids, *args, **kwargs)
def save_local(self, *args, **kwargs):
pass
def delete_index(self, *args, **kwargs):
pass
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import logging
from functools import cached_property
from application.core.settings import settings
from application.vectorstore.base import BaseVectorStore
from application.vectorstore.document_class import Document
def _lazy_import_pymongo():
"""Lazy import of pymongo so installations that don't use the MongoDB vectorstore don't need it."""
try:
import pymongo
except ImportError as exc:
raise ImportError(
"Could not import pymongo python package. "
"Please install it with `pip install pymongo`."
) from exc
return pymongo
class MongoDBVectorStore(BaseVectorStore):
def __init__(
self,
source_id: str = "",
embeddings_key: str = "embeddings",
collection: str = "documents",
index_name: str = "vector_search_index",
text_key: str = "text",
embedding_key: str = "embedding",
database: str = "docsgpt",
):
self._index_name = index_name
self._text_key = text_key
self._embedding_key = embedding_key
self._embeddings_key = embeddings_key
self._mongo_uri = settings.MONGO_URI
self._database_name = database
self._collection_name = collection
self._source_id = source_id.replace("application/indexes/", "").rstrip("/")
self._embedding = self._get_embeddings(settings.EMBEDDINGS_NAME, embeddings_key)
@cached_property
def _client(self):
pymongo = _lazy_import_pymongo()
return pymongo.MongoClient(self._mongo_uri)
@cached_property
def _database(self):
return self._client[self._database_name]
@cached_property
def _collection(self):
return self._database[self._collection_name]
def search(self, question, k=2, *args, score_threshold=None, **kwargs):
"""Search via Atlas ``$vectorSearch``.
Args:
question: The query string.
k: Maximum number of results.
score_threshold: Optional ``vectorSearchScore`` floor in ``[0, 1]``;
results scoring below it are dropped.
"""
query_vector = self._embedding.embed_query(question)
pipeline = [
{
"$vectorSearch": {
"queryVector": query_vector,
"path": self._embedding_key,
"limit": k,
"numCandidates": k * 10,
"index": self._index_name,
"filter": {"source_id": {"$eq": self._source_id}},
}
}
]
if score_threshold is not None:
pipeline.append({"$addFields": {"_score": {"$meta": "vectorSearchScore"}}})
pipeline.append({"$match": {"_score": {"$gte": float(score_threshold)}}})
cursor = self._collection.aggregate(pipeline)
results = []
for doc in cursor:
text = doc[self._text_key]
doc.pop("_id")
doc.pop(self._text_key)
doc.pop(self._embedding_key)
doc.pop("_score", None)
metadata = doc
results.append(Document(text, metadata))
return results
def _insert_texts(self, texts, metadatas):
if not texts:
return []
embeddings = self._embedding.embed_documents(texts)
to_insert = [
{self._text_key: t, self._embedding_key: embedding, **m}
for t, m, embedding in zip(texts, metadatas, embeddings)
]
insert_result = self._collection.insert_many(to_insert)
return insert_result.inserted_ids
def add_texts(
self,
texts,
metadatas=None,
ids=None,
refresh_indices=True,
create_index_if_not_exists=True,
bulk_kwargs=None,
**kwargs,
):
# dims = self._embedding.client[1].word_embedding_dimension
# # check if index exists
# if create_index_if_not_exists:
# # check if index exists
# info = self._collection.index_information()
# if self._index_name not in info:
# index_mongo = {
# "fields": [{
# "type": "vector",
# "path": self._embedding_key,
# "numDimensions": dims,
# "similarity": "cosine",
# },
# {
# "type": "filter",
# "path": "store"
# }]
# }
# self._collection.create_index(self._index_name, index_mongo)
batch_size = 100
_metadatas = metadatas or ({} for _ in texts)
texts_batch = []
metadatas_batch = []
result_ids = []
for i, (text, metadata) in enumerate(zip(texts, _metadatas)):
texts_batch.append(text)
metadatas_batch.append(metadata)
if (i + 1) % batch_size == 0:
result_ids.extend(self._insert_texts(texts_batch, metadatas_batch))
texts_batch = []
metadatas_batch = []
if texts_batch:
result_ids.extend(self._insert_texts(texts_batch, metadatas_batch))
return result_ids
def delete_index(self, *args, **kwargs):
self._collection.delete_many({"source_id": self._source_id})
def get_chunks(self):
try:
chunks = []
cursor = self._collection.find({"source_id": self._source_id})
for doc in cursor:
doc_id = str(doc.get("_id"))
text = doc.get(self._text_key)
metadata = {
k: v
for k, v in doc.items()
if k
not in ["_id", self._text_key, self._embedding_key, "source_id"]
}
if text:
chunks.append(
{"doc_id": doc_id, "text": text, "metadata": metadata}
)
return chunks
except Exception as e:
logging.error(f"Error getting chunks: {e}", exc_info=True)
return []
def add_chunk(self, text, metadata=None):
metadata = metadata or {}
embeddings = self._embedding.embed_documents([text])
if not embeddings:
raise ValueError("Could not generate embedding for chunk")
chunk_data = {
self._text_key: text,
self._embedding_key: embeddings[0],
"source_id": self._source_id,
**metadata,
}
result = self._collection.insert_one(chunk_data)
return str(result.inserted_id)
def delete_chunk(self, chunk_id):
try:
from bson.objectid import ObjectId
object_id = ObjectId(chunk_id)
result = self._collection.delete_one({"_id": object_id})
return result.deleted_count > 0
except Exception as e:
logging.error(f"Error deleting chunk: {e}", exc_info=True)
return False
+406
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import logging
from typing import List, Optional, Any, Dict
from psycopg.types.json import Jsonb
from application.core.settings import settings
from application.vectorstore.base import BaseVectorStore
from application.vectorstore.document_class import Document
class PGVectorStore(BaseVectorStore):
def __init__(
self,
source_id: str = "",
embeddings_key: str = "embeddings",
table_name: str = "documents",
decoded_token: Optional[str] = None,
vector_column: str = "embedding",
text_column: str = "text",
metadata_column: str = "metadata",
connection_string: str = None,
):
super().__init__()
# Store the source_id for use in add_chunk
self._source_id = str(source_id).replace("application/indexes/", "").rstrip("/")
self._embeddings_key = embeddings_key
self._table_name = table_name
self._vector_column = vector_column
self._text_column = text_column
self._metadata_column = metadata_column
self._embedding = self._get_embeddings(settings.EMBEDDINGS_NAME, embeddings_key)
# Use provided connection string or fall back to settings.
# If PGVECTOR_CONNECTION_STRING is not set but POSTGRES_URI is,
# reuse the same cluster — normalize from SQLAlchemy dialect to libpq form.
self._connection_string = connection_string or getattr(settings, 'PGVECTOR_CONNECTION_STRING', None)
if not self._connection_string and getattr(settings, 'POSTGRES_URI', None):
from application.core.db_uri import normalize_pgvector_connection_string
self._connection_string = normalize_pgvector_connection_string(settings.POSTGRES_URI)
if not self._connection_string:
raise ValueError(
"PostgreSQL connection string is required. "
"Set PGVECTOR_CONNECTION_STRING or POSTGRES_URI in settings, "
"or pass connection_string parameter."
)
try:
import psycopg
from pgvector.psycopg import register_vector
except ImportError:
raise ImportError(
"Could not import required packages. "
"Please install with `pip install 'psycopg[binary,pool]' pgvector`."
)
self._psycopg = psycopg
self._register_vector = register_vector
self._connection = None
self._ensure_table_exists()
def _get_connection(self):
"""Get or create database connection"""
if self._connection is None or self._connection.closed:
self._connection = self._psycopg.connect(self._connection_string)
# Register pgvector types
self._register_vector(self._connection)
return self._connection
def _ensure_table_exists(self):
"""Create table and enable pgvector extension if they don't exist"""
conn = self._get_connection()
cursor = conn.cursor()
try:
# Enable pgvector extension
cursor.execute("CREATE EXTENSION IF NOT EXISTS vector;")
embedding_dim = getattr(self._embedding, 'dimension', 768)
# Create table with vector column
create_table_query = f"""
CREATE TABLE IF NOT EXISTS {self._table_name} (
id SERIAL PRIMARY KEY,
{self._text_column} TEXT NOT NULL,
{self._vector_column} vector({embedding_dim}),
{self._metadata_column} JSONB,
source_id TEXT NOT NULL,
created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
);
"""
cursor.execute(create_table_query)
# Create index for vector similarity search
index_query = f"""
CREATE INDEX IF NOT EXISTS {self._table_name}_{self._vector_column}_idx
ON {self._table_name} USING ivfflat ({self._vector_column} vector_cosine_ops)
WITH (lists = 100);
"""
cursor.execute(index_query)
# Create index for source_id filtering
source_index_query = f"""
CREATE INDEX IF NOT EXISTS {self._table_name}_source_id_idx
ON {self._table_name} (source_id);
"""
cursor.execute(source_index_query)
# Functional GIN index backing keyword_search full-text queries.
fts_index_query = f"""
CREATE INDEX IF NOT EXISTS {self._table_name}_text_fts_idx
ON {self._table_name} USING gin(to_tsvector('english', {self._text_column}));
"""
cursor.execute(fts_index_query)
conn.commit()
except Exception as e:
conn.rollback()
logging.error(f"Error creating table: {e}")
raise
finally:
cursor.close()
def search(
self,
question: str,
k: int = 2,
*args,
score_threshold: float = None,
**kwargs,
) -> List[Document]:
"""Search for similar documents using vector similarity.
Args:
question: The query string.
k: Maximum number of results.
score_threshold: Optional cosine-similarity floor in ``[0, 1]``.
Cosine distance = ``1 - similarity``; rows with similarity below
the threshold (distance above ``1 - threshold``) are dropped.
"""
query_vector = self._embedding.embed_query(question)
conn = self._get_connection()
cursor = conn.cursor()
try:
# Use cosine distance for similarity search with proper vector formatting
search_query = f"""
SELECT {self._text_column}, {self._metadata_column},
({self._vector_column} <=> %s::vector) as distance
FROM {self._table_name}
WHERE source_id = %s
ORDER BY {self._vector_column} <=> %s::vector
LIMIT %s;
"""
cursor.execute(search_query, (query_vector, self._source_id, query_vector, k))
results = cursor.fetchall()
max_distance = None
if score_threshold is not None:
max_distance = 1.0 - float(score_threshold)
documents = []
for text, metadata, distance in results:
if max_distance is not None and distance is not None and distance > max_distance:
continue
metadata = metadata or {}
documents.append(Document(page_content=text, metadata=metadata))
return documents
except Exception as e:
logging.error(f"Error searching documents: {e}", exc_info=True)
return []
finally:
cursor.close()
def keyword_search(self, question: str, k: int = 10) -> List[Document]:
"""Full-text keyword search using Postgres ``websearch_to_tsquery``.
Returns the same ``Document`` shape as :meth:`search`. The question is
bound as a query parameter (never interpolated) to prevent injection.
"""
conn = self._get_connection()
cursor = conn.cursor()
try:
keyword_query = f"""
SELECT {self._text_column}, {self._metadata_column},
ts_rank(
to_tsvector('english', {self._text_column}),
websearch_to_tsquery('english', %s)
) AS rank
FROM {self._table_name}
WHERE source_id = %s
AND to_tsvector('english', {self._text_column})
@@ websearch_to_tsquery('english', %s)
ORDER BY rank DESC
LIMIT %s;
"""
cursor.execute(
keyword_query, (question, self._source_id, question, k)
)
results = cursor.fetchall()
documents = []
for text, metadata, _rank in results:
metadata = metadata or {}
documents.append(Document(page_content=text, metadata=metadata))
return documents
except Exception as e:
logging.error(f"Error in keyword search: {e}", exc_info=True)
return []
finally:
cursor.close()
def add_texts(
self,
texts: List[str],
metadatas: Optional[List[Dict[str, Any]]] = None,
*args,
**kwargs,
) -> List[str]:
"""Add texts with their embeddings to the vector store"""
if not texts:
return []
embeddings = self._embedding.embed_documents(texts)
metadatas = metadatas or [{}] * len(texts)
conn = self._get_connection()
cursor = conn.cursor()
try:
insert_query = f"""
INSERT INTO {self._table_name} ({self._text_column}, {self._vector_column}, {self._metadata_column}, source_id)
VALUES (%s, %s, %s, %s)
RETURNING id;
"""
inserted_ids = []
for text, embedding, metadata in zip(texts, embeddings, metadatas):
cursor.execute(
insert_query,
(text, embedding, Jsonb(metadata), self._source_id)
)
inserted_id = cursor.fetchone()[0]
inserted_ids.append(str(inserted_id))
conn.commit()
return inserted_ids
except Exception as e:
conn.rollback()
logging.error(f"Error adding texts: {e}")
raise
finally:
cursor.close()
def delete_index(self, *args, **kwargs):
"""Delete all documents for this source_id"""
conn = self._get_connection()
cursor = conn.cursor()
try:
delete_query = f"DELETE FROM {self._table_name} WHERE source_id = %s;"
cursor.execute(delete_query, (self._source_id,))
conn.commit()
except Exception as e:
conn.rollback()
logging.error(f"Error deleting index: {e}")
raise
finally:
cursor.close()
def save_local(self, *args, **kwargs):
"""No-op for PostgreSQL - data is already persisted"""
pass
def get_chunks(self) -> List[Dict[str, Any]]:
"""Get all chunks for this source_id"""
conn = self._get_connection()
cursor = conn.cursor()
try:
select_query = f"""
SELECT id, {self._text_column}, {self._metadata_column}
FROM {self._table_name}
WHERE source_id = %s;
"""
cursor.execute(select_query, (self._source_id,))
results = cursor.fetchall()
chunks = []
for doc_id, text, metadata in results:
chunks.append({
"doc_id": str(doc_id),
"text": text,
"metadata": metadata or {}
})
return chunks
except Exception as e:
logging.error(f"Error getting chunks: {e}")
return []
finally:
cursor.close()
def add_chunk(self, text: str, metadata: Optional[Dict[str, Any]] = None) -> str:
"""Add a single chunk to the vector store"""
metadata = metadata or {}
final_metadata = metadata.copy()
final_metadata["source_id"] = self._source_id
embeddings = self._embedding.embed_documents([text])
if not embeddings:
raise ValueError("Could not generate embedding for chunk")
conn = self._get_connection()
cursor = conn.cursor()
try:
insert_query = f"""
INSERT INTO {self._table_name} ({self._text_column}, {self._vector_column}, {self._metadata_column}, source_id)
VALUES (%s, %s, %s, %s)
RETURNING id;
"""
cursor.execute(
insert_query,
(text, embeddings[0], Jsonb(final_metadata), self._source_id)
)
inserted_id = cursor.fetchone()[0]
conn.commit()
return str(inserted_id)
except Exception as e:
conn.rollback()
logging.error(f"Error adding chunk: {e}")
raise
finally:
cursor.close()
def delete_chunk(self, chunk_id: str) -> bool:
"""Delete a specific chunk by its ID"""
conn = self._get_connection()
cursor = conn.cursor()
try:
delete_query = f"DELETE FROM {self._table_name} WHERE id = %s AND source_id = %s;"
cursor.execute(delete_query, (int(chunk_id), self._source_id))
deleted_count = cursor.rowcount
conn.commit()
return deleted_count > 0
except Exception as e:
conn.rollback()
logging.error(f"Error deleting chunk: {e}")
return False
finally:
cursor.close()
def delete_chunks_by_source_path(self, path: str) -> int:
"""Delete this source's chunks whose ``metadata.source`` equals ``path``.
One targeted statement instead of the base loop+scan. The path is bound
as a query parameter (never interpolated); only the internal table name
is f-string interpolated. Returns the number of rows deleted.
"""
conn = self._get_connection()
cursor = conn.cursor()
try:
delete_query = (
f"DELETE FROM {self._table_name} "
f"WHERE source_id = %s AND {self._metadata_column}->>'source' = %s;"
)
cursor.execute(delete_query, (self._source_id, path))
deleted_count = cursor.rowcount
conn.commit()
return deleted_count
except Exception as e:
conn.rollback()
logging.error(f"Error deleting chunks by source path: {e}")
raise
finally:
cursor.close()
def __del__(self):
"""Close database connection when object is destroyed"""
if hasattr(self, '_connection') and self._connection and not self._connection.closed:
self._connection.close()
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import logging
from application.vectorstore.base import BaseVectorStore
from application.core.settings import settings
from application.vectorstore.document_class import Document
class QdrantStore(BaseVectorStore):
def __init__(self, source_id: str = "", embeddings_key: str = "embeddings"):
from qdrant_client import models
from langchain_community.vectorstores.qdrant import Qdrant
# Store the source_id for use in add_chunk
self._source_id = str(source_id).replace("application/indexes/", "").rstrip("/")
self._filter = models.Filter(
must=[
models.FieldCondition(
key="metadata.source_id",
match=models.MatchValue(value=self._source_id),
)
]
)
embedding=self._get_embeddings(settings.EMBEDDINGS_NAME, embeddings_key)
self._docsearch = Qdrant.construct_instance(
["TEXT_TO_OBTAIN_EMBEDDINGS_DIMENSION"],
embedding=embedding,
collection_name=settings.QDRANT_COLLECTION_NAME,
location=settings.QDRANT_LOCATION,
url=settings.QDRANT_URL,
port=settings.QDRANT_PORT,
grpc_port=settings.QDRANT_GRPC_PORT,
https=settings.QDRANT_HTTPS,
prefer_grpc=settings.QDRANT_PREFER_GRPC,
api_key=settings.QDRANT_API_KEY,
prefix=settings.QDRANT_PREFIX,
timeout=settings.QDRANT_TIMEOUT,
path=settings.QDRANT_PATH,
distance_func=settings.QDRANT_DISTANCE_FUNC,
)
try:
collections = self._docsearch.client.get_collections()
collection_exists = settings.QDRANT_COLLECTION_NAME in [
collection.name for collection in collections.collections
]
if not collection_exists:
self._docsearch.client.recreate_collection(
collection_name=settings.QDRANT_COLLECTION_NAME,
vectors_config=models.VectorParams(size=embedding.client[1].word_embedding_dimension, distance=models.Distance.COSINE),
)
# Ensure the required index exists for metadata.source_id
try:
self._docsearch.client.create_payload_index(
collection_name=settings.QDRANT_COLLECTION_NAME,
field_name="metadata.source_id",
field_schema=models.PayloadSchemaType.KEYWORD,
)
except Exception as index_error:
# Index might already exist, which is fine
if "already exists" not in str(index_error).lower():
logging.warning(f"Could not create index for metadata.source_id: {index_error}")
except Exception as e:
logging.warning(f"Could not check for collection: {e}")
def search(self, *args, **kwargs):
# Drop the per-source score_threshold (unsupported here) so it is safely
# ignored instead of being forwarded into the langchain call.
kwargs.pop("score_threshold", None)
return self._docsearch.similarity_search(filter=self._filter, *args, **kwargs)
def add_texts(self, *args, **kwargs):
return self._docsearch.add_texts(*args, **kwargs)
def save_local(self, *args, **kwargs):
pass
def delete_index(self, *args, **kwargs):
return self._docsearch.client.delete(
collection_name=settings.QDRANT_COLLECTION_NAME, points_selector=self._filter
)
def get_chunks(self):
try:
chunks = []
offset = None
while True:
records, offset = self._docsearch.client.scroll(
collection_name=settings.QDRANT_COLLECTION_NAME,
scroll_filter=self._filter,
limit=10,
with_payload=True,
with_vectors=False,
offset=offset,
)
for record in records:
doc_id = record.id
text = record.payload.get("page_content")
metadata = record.payload.get("metadata")
chunks.append(
{"doc_id": doc_id, "text": text, "metadata": metadata}
)
if offset is None:
break
return chunks
except Exception as e:
logging.error(f"Error getting chunks: {e}", exc_info=True)
return []
def add_chunk(self, text, metadata=None):
import uuid
metadata = metadata or {}
# Create a copy to avoid modifying the original metadata
final_metadata = metadata.copy()
# Ensure the source_id is in the metadata so the chunk can be found by filters
final_metadata["source_id"] = self._source_id
doc = Document(page_content=text, metadata=final_metadata)
# Generate a unique ID for the document
doc_id = str(uuid.uuid4())
doc.id = doc_id
doc_ids = self._docsearch.add_documents([doc])
return doc_ids[0] if doc_ids else doc_id
def delete_chunk(self, chunk_id):
try:
self._docsearch.client.delete(
collection_name=settings.QDRANT_COLLECTION_NAME,
points_selector=[chunk_id],
)
return True
except Exception as e:
logging.error(f"Error deleting chunk: {e}", exc_info=True)
return False
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from application.vectorstore.faiss import FaissStore
from application.vectorstore.elasticsearch import ElasticsearchStore
from application.vectorstore.milvus import MilvusStore
from application.vectorstore.mongodb import MongoDBVectorStore
from application.vectorstore.qdrant import QdrantStore
from application.vectorstore.pgvector import PGVectorStore
class VectorCreator:
vectorstores = {
"faiss": FaissStore,
"elasticsearch": ElasticsearchStore,
"mongodb": MongoDBVectorStore,
"qdrant": QdrantStore,
"milvus": MilvusStore,
"pgvector": PGVectorStore
}
@classmethod
def create_vectorstore(cls, type, *args, **kwargs):
vectorstore_class = cls.vectorstores.get(type.lower())
if not vectorstore_class:
raise ValueError(f"No vectorstore class found for type {type}")
return vectorstore_class(*args, **kwargs)