#!/bin/bash # Runs chandra benchmark, measuring both olmOCR-bench performance and per document processing performance # Usage: # ./scripts/run_chandra_benchmark.sh # Use latest chandra version, default benchmark repo # ./scripts/run_chandra_benchmark.sh 0.1.0 # Use specific chandra version # ./scripts/run_chandra_benchmark.sh --version 0.1.0 # Use specific chandra version (explicit flag) # ./scripts/run_chandra_benchmark.sh --benchrepo allenai/olmOCR-bench-internal # Use different benchmark repo # ./scripts/run_chandra_benchmark.sh --benchbranch olmOCR-bench-1125 # Use specific branch/revision # ./scripts/run_chandra_benchmark.sh --benchpath s3://ai2-oe-data/path/ # Use benchmark from S3 or local path # ./scripts/run_chandra_benchmark.sh --cluster ai2/titan-cirrascale # Specify a cluster # ./scripts/run_chandra_benchmark.sh --beaker-image jakep/olmocr-benchmark-0.3.3-780bc7d934 # Skip Docker build # ./scripts/run_chandra_benchmark.sh --noperf # Skip the performance test job # ./scripts/run_chandra_benchmark.sh --model datalab-to/chandra-ocr-2 # Use a specific model set -e # Parse command line arguments CHANDRA_VERSION="" BENCH_BRANCH="" BENCH_REPO="" BENCH_PATH="" CLUSTER="" BEAKER_IMAGE="" NOPERF="" MODEL="" # Default to latest if no version specified while [[ $# -gt 0 ]]; do case $1 in --version) CHANDRA_VERSION="$2" shift 2 ;; --benchbranch) BENCH_BRANCH="$2" shift 2 ;; --benchrepo) BENCH_REPO="$2" shift 2 ;; --benchpath) BENCH_PATH="$2" shift 2 ;; --cluster) CLUSTER="$2" shift 2 ;; --beaker-image) BEAKER_IMAGE="$2" shift 2 ;; --noperf) NOPERF="1" shift ;; --model) MODEL="$2" shift 2 ;; *) # If no flag, assume it's the version for backward compatibility if [ -z "$CHANDRA_VERSION" ]; then CHANDRA_VERSION="$1" else echo "Unknown option: $1" echo "Usage: $0 [VERSION] [--version VERSION] [--benchbranch BRANCH] [--benchrepo REPO] [--benchpath PATH] [--cluster CLUSTER] [--beaker-image IMAGE] [--noperf] [--model MODEL]" exit 1 fi shift ;; esac done # Set default chandra version if not specified if [ -z "$CHANDRA_VERSION" ]; then CHANDRA_VERSION="latest" fi if [ "$CHANDRA_VERSION" = "latest" ]; then echo "Using latest chandra-ocr release" CHANDRA_INSTALL_CMD="uv pip install --system chandra-ocr" else echo "Using chandra-ocr version: $CHANDRA_VERSION" CHANDRA_INSTALL_CMD="uv pip install --system chandra-ocr==$CHANDRA_VERSION" fi # Check for mutual exclusivity between benchpath and benchrepo/benchbranch if [ -n "$BENCH_PATH" ] && ([ -n "$BENCH_REPO" ] || [ -n "$BENCH_BRANCH" ]); then echo "Error: --benchpath is mutually exclusive with --benchrepo and --benchbranch" echo "Use either --benchpath OR --benchrepo/--benchbranch, not both." exit 1 fi # Use conda environment Python if available, otherwise use system Python if [ -n "$CONDA_PREFIX" ]; then PYTHON="$CONDA_PREFIX/bin/python" echo "Using conda Python from: $CONDA_PREFIX" else PYTHON="python" echo "Warning: No conda environment detected, using system Python" fi # Get version from version.py VERSION=$($PYTHON -c 'import olmocr.version; print(olmocr.version.VERSION)') echo "OlmOCR version: $VERSION" # Get first 10 characters of git hash GIT_HASH=$(git rev-parse HEAD | cut -c1-10) echo "Git hash: $GIT_HASH" # Get current git branch name GIT_BRANCH=$(git rev-parse --abbrev-ref HEAD) echo "Git branch: $GIT_BRANCH" # Check if a Beaker image was provided if [ -n "$BEAKER_IMAGE" ]; then echo "Using provided Beaker image: $BEAKER_IMAGE" IMAGE_TAG="$BEAKER_IMAGE" else # Create full image tag IMAGE_TAG="olmocr-benchmark-${VERSION}-${GIT_HASH}" echo "Building Docker image with tag: $IMAGE_TAG" # Build the Docker image echo "Building Docker image..." docker build --platform linux/amd64 -f ./Dockerfile -t $IMAGE_TAG . # Push image to beaker echo "Trying to push image to Beaker..." if ! beaker image create --workspace ai2/oe-data-pdf --name $IMAGE_TAG $IMAGE_TAG 2>/dev/null; then echo "Warning: Beaker image with tag $IMAGE_TAG already exists. Using existing image." fi fi # Get Beaker username BEAKER_USER=$(beaker account whoami --format json | jq -r '.[0].name') echo "Beaker user: $BEAKER_USER" # Create Python script to run beaker experiment cat << 'EOF' > /tmp/run_benchmark_experiment.py import sys from textwrap import dedent from beaker import Beaker, BeakerExperimentSpec, BeakerTaskSpec, BeakerTaskContext, BeakerResultSpec, BeakerTaskResources, BeakerImageSource, BeakerJobPriority, BeakerConstraints, BeakerEnvVar # Get image tag, beaker user, git branch, git hash, and chandra version from command line image_tag = sys.argv[1] beaker_user = sys.argv[2] git_branch = sys.argv[3] git_hash = sys.argv[4] chandra_version = sys.argv[5] chandra_install_cmd = sys.argv[6] # Initialize benchmark dataset parameters bench_branch = None bench_repo = "allenai/olmOCR-bench" # Default repository bench_path = None cluster = None noperf = False model = None # Parse additional arguments arg_idx = 7 while arg_idx < len(sys.argv): if sys.argv[arg_idx] == "--benchbranch": bench_branch = sys.argv[arg_idx + 1] arg_idx += 2 elif sys.argv[arg_idx] == "--benchrepo": bench_repo = sys.argv[arg_idx + 1] arg_idx += 2 elif sys.argv[arg_idx] == "--benchpath": bench_path = sys.argv[arg_idx + 1] arg_idx += 2 elif sys.argv[arg_idx] == "--cluster": cluster = sys.argv[arg_idx + 1] arg_idx += 2 elif sys.argv[arg_idx] == "--noperf": noperf = True arg_idx += 1 elif sys.argv[arg_idx] == "--model": model = sys.argv[arg_idx + 1] arg_idx += 2 else: print(f"Unknown argument: {sys.argv[arg_idx]}") arg_idx += 1 # Default model for chandra chandra_model = model if model else "datalab-to/chandra-ocr-2" # Initialize Beaker client b = Beaker.from_env(default_workspace="ai2/olmocr") # Check if AWS credentials secret exists aws_creds_secret = f"{beaker_user}-AWS_CREDENTIALS_FILE" try: # Try to get the secret to see if it exists b.secret.get(aws_creds_secret, workspace="ai2/olmocr") has_aws_creds = True print(f"Found AWS credentials secret: {aws_creds_secret}") except: has_aws_creds = False print(f"AWS credentials secret not found: {aws_creds_secret}") # Shell script to run Chandra conversions for benchmark run_chandra_shell = dedent("""\ bash -lc 'set -euo pipefail PDF_ROOT="olmOCR-bench/bench_data/pdfs" TARGET_ROOT="olmOCR-bench/bench_data/chandra" rm -rf "$TARGET_ROOT" mkdir -p "$TARGET_ROOT" # Start vllm server in background echo "Starting vllm server for Chandra..." vllm serve __CHANDRA_MODEL__ --served-model-name chandra > /tmp/vllm_server.log 2>&1 & VLLM_PID=$! # Wait for vllm server to be ready echo "Waiting for vllm server to start..." for i in {1..600}; do if curl -s http://localhost:8000/health > /dev/null 2>&1; then echo "vllm server is ready" break fi if [ $i -eq 600 ]; then echo "Error: vllm server failed to start after 600 seconds" cat /tmp/vllm_server.log exit 1 fi sleep 1 done # Process each folder separately to maintain structure echo "Running Chandra conversions..." for folder in "$PDF_ROOT"/*; do if [ ! -d "$folder" ]; then continue fi section=$(basename "$folder") output_dir="$HOME/chandra_bench_${section}" rm -rf "$output_dir" mkdir -p "$output_dir" echo " Processing $folder -> $output_dir" chandra "$folder" "$output_dir" --method vllm done echo "Collecting Chandra markdown outputs..." # For each PDF, find its corresponding markdown and copy to proper location find "$PDF_ROOT" -type f -name "*.pdf" | while IFS= read -r pdf_path; do # Get relative path from PDF root rel_path=${pdf_path#"$PDF_ROOT"/} # Extract section name (first directory level) case "$rel_path" in */*) section=${rel_path%%/*} ;; *) echo "Warning: Unexpected PDF path layout for $pdf_path, skipping" >&2 continue ;; esac # Get PDF name without extension pdf_name=$(basename "$pdf_path" .pdf) # Source markdown location: ~/chandra_bench_${section}/${pdf_name}/${pdf_name}.md src_md="$HOME/chandra_bench_${section}/${pdf_name}/${pdf_name}.md" if [ ! -f "$src_md" ]; then echo "Warning: No markdown output found at $src_md" >&2 continue fi # Target location: olmOCR-bench/bench_data/chandra/${section}/${pdf_name}_pg1_repeat1.md target_dir="$TARGET_ROOT/$section" mkdir -p "$target_dir" target_path="$target_dir/${pdf_name}_pg1_repeat1.md" cp "$src_md" "$target_path" echo " Copied $src_md -> $target_path" done # Kill vllm server echo "Stopping vllm server..." kill $VLLM_PID || true wait $VLLM_PID 2>/dev/null || true '""").replace("__CHANDRA_MODEL__", chandra_model) # Check if HF_TOKEN secret exists hf_token_secret = f"{beaker_user}-HF_TOKEN" try: # Try to get the secret to see if it exists b.secret.get(hf_token_secret, workspace="ai2/olmocr") has_hf_token = True print(f"Found HuggingFace token secret: {hf_token_secret}") except: has_hf_token = False print(f"HuggingFace token secret not found: {hf_token_secret}") # First experiment: Original benchmark job commands = [] if has_aws_creds: commands.extend([ "mkdir -p ~/.aws", 'echo "$AWS_CREDENTIALS_FILE" > ~/.aws/credentials' ]) if has_hf_token: commands.append('export HF_TOKEN="$HF_TOKEN"') # Install uv for fast dependency management, then s5cmd (needed for S3 operations) commands.append("pip install uv") commands.append("uv pip install --system s5cmd") # Handle benchmark data download based on source type if bench_path: # If bench_path is provided, use it (can be S3 or local path) if bench_path.startswith("s3://"): # S3 path - use s5cmd to download commands.append(f"s5cmd cp {bench_path.rstrip('/')}/* ./olmOCR-bench/") else: # Local path - copy directly commands.append(f"cp -r {bench_path} ./olmOCR-bench") else: # Use HuggingFace download (default behavior) hf_download_cmd = f"hf download --repo-type dataset {bench_repo} --max-workers 2" if bench_branch: hf_download_cmd += f" --revision {bench_branch}" hf_download_cmd += " --local-dir ./olmOCR-bench" commands.append(hf_download_cmd) commands.extend([ chandra_install_cmd, "uv pip uninstall --system vllm flashinfer flashinfer-python flashinfer-cubin || true", "uv pip install --system vllm --torch-backend=auto", run_chandra_shell, "python -m olmocr.bench.benchmark --dir ./olmOCR-bench/bench_data --candidate chandra" ]) # Build task spec with optional env vars # If image_tag contains '/', it's already a full beaker image reference if '/' in image_tag: image_ref = image_tag else: image_ref = f"{beaker_user}/{image_tag}" task_spec_args = { "name": "chandra-benchmark", "image": BeakerImageSource(beaker=image_ref), "command": [ "bash", "-c", " && ".join(commands) ], "context": BeakerTaskContext( priority=BeakerJobPriority["normal"], preemptible=True, ), "resources": BeakerTaskResources(gpu_count=1), "constraints": BeakerConstraints(cluster=[cluster] if cluster else ["ai2/ceres-cirrascale", "ai2/jupiter-cirrascale-2"]), "result": BeakerResultSpec(path="/noop-results"), } # Add env vars if AWS credentials or HF token exist env_vars = [] if has_aws_creds: env_vars.append(BeakerEnvVar(name="AWS_CREDENTIALS_FILE", secret=aws_creds_secret)) if has_hf_token: env_vars.append(BeakerEnvVar(name="HF_TOKEN", secret=hf_token_secret)) if env_vars: task_spec_args["env_vars"] = env_vars # Create first experiment spec chandra_version_label = "latest" if chandra_version == "latest" else chandra_version experiment_spec = BeakerExperimentSpec( description=f"Chandra {chandra_version_label} Benchmark Run - Branch: {git_branch}, Commit: {git_hash}", budget="ai2/oe-base", tasks=[BeakerTaskSpec(**task_spec_args)], ) # Create the first experiment workload = b.experiment.create(spec=experiment_spec, workspace="ai2/olmocr") print(f"Created benchmark experiment: {workload.experiment.id}") print(f"View at: https://beaker.org/ex/{workload.experiment.id}") print("-------") print("") # Second experiment: Performance test job (only if --noperf not specified) if not noperf: perf_commands = [] if has_aws_creds: perf_commands.extend([ "mkdir -p ~/.aws", 'echo "$AWS_CREDENTIALS_FILE" > ~/.aws/credentials' ]) if has_hf_token: perf_commands.append('export HF_TOKEN="$HF_TOKEN"') # Shell script for performance test perf_shell = dedent("""\ set -euo pipefail # Start vllm server in background echo "Starting vllm server for Chandra..." vllm serve __CHANDRA_MODEL__ --served-model-name chandra > /tmp/vllm_server.log 2>&1 & VLLM_PID=$! # Wait for vllm server to be ready echo "Waiting for vllm server to start..." for i in {1..600}; do if curl -s http://localhost:8000/health > /dev/null 2>&1; then echo "vllm server is ready" break fi if [ $i -eq 600 ]; then echo "Error: vllm server failed to start after 600 seconds" cat /tmp/vllm_server.log exit 1 fi sleep 1 done # Run the performance test time chandra /root/olmOCR-mix-0225_benchmark_set/ /root/olmOCR-mix-0225_benchmark_set_chandra --method vllm # Kill vllm server echo "Stopping vllm server..." kill $VLLM_PID || true wait $VLLM_PID 2>/dev/null || true """).replace("__CHANDRA_MODEL__", chandra_model) perf_commands.extend([ "pip install uv", chandra_install_cmd, "uv pip uninstall --system vllm flashinfer flashinfer-python flashinfer-cubin || true", "uv pip install --system vllm --torch-backend=auto", "uv pip install --system awscli", "aws s3 cp --recursive s3://ai2-oe-data/jakep/olmocr/olmOCR-mix-0225/benchmark_set/ /root/olmOCR-mix-0225_benchmark_set/", f"bash -c '{perf_shell}'" ]) # Build performance task spec perf_task_spec_args = { "name": "chandra-performance", "image": BeakerImageSource(beaker=image_ref), "command": [ "bash", "-c", " && ".join(perf_commands) ], "context": BeakerTaskContext( priority=BeakerJobPriority["normal"], preemptible=True, ), # Need to reserve all 8 gpus for performance spec or else benchmark results can be off (1 for titan-cirrascale) "resources": BeakerTaskResources(gpu_count=1 if cluster == "ai2/titan-cirrascale" else 8), "constraints": BeakerConstraints(cluster=[cluster] if cluster else ["ai2/ceres-cirrascale", "ai2/jupiter-cirrascale-2"]), "result": BeakerResultSpec(path="/noop-results"), } # Add env vars if AWS credentials or HF token exist env_vars = [] if has_aws_creds: env_vars.append(BeakerEnvVar(name="AWS_CREDENTIALS_FILE", secret=aws_creds_secret)) if has_hf_token: env_vars.append(BeakerEnvVar(name="HF_TOKEN", secret=hf_token_secret)) if env_vars: perf_task_spec_args["env_vars"] = env_vars # Create performance experiment spec perf_experiment_spec = BeakerExperimentSpec( description=f"Chandra {chandra_version_label} Performance Test - Branch: {git_branch}, Commit: {git_hash}", budget="ai2/oe-base", tasks=[BeakerTaskSpec(**perf_task_spec_args)], ) # Create the performance experiment perf_workload = b.experiment.create(spec=perf_experiment_spec, workspace="ai2/olmocr") print(f"Created performance experiment: {perf_workload.experiment.id}") print(f"View at: https://beaker.org/ex/{perf_workload.experiment.id}") else: print("Skipping performance test (--noperf flag specified)") EOF # Run the Python script to create the experiments echo "Creating Beaker experiments..." # Build command with appropriate arguments CMD="$PYTHON /tmp/run_benchmark_experiment.py $IMAGE_TAG $BEAKER_USER $GIT_BRANCH $GIT_HASH \"$CHANDRA_VERSION\" \"$CHANDRA_INSTALL_CMD\"" if [ -n "$BENCH_BRANCH" ]; then echo "Using bench branch: $BENCH_BRANCH" CMD="$CMD --benchbranch \"$BENCH_BRANCH\"" fi if [ -n "$BENCH_REPO" ]; then echo "Using bench repo: $BENCH_REPO" CMD="$CMD --benchrepo \"$BENCH_REPO\"" fi if [ -n "$BENCH_PATH" ]; then echo "Using bench path: $BENCH_PATH" CMD="$CMD --benchpath \"$BENCH_PATH\"" fi if [ -n "$CLUSTER" ]; then echo "Using cluster: $CLUSTER" CMD="$CMD --cluster $CLUSTER" fi if [ -n "$NOPERF" ]; then echo "Skipping performance tests" CMD="$CMD --noperf" fi if [ -n "$MODEL" ]; then echo "Using model: $MODEL" CMD="$CMD --model $MODEL" fi eval $CMD # Clean up temporary file rm /tmp/run_benchmark_experiment.py echo "Benchmark experiments submitted successfully!"